Ignicoccus hospitalis: Igni_0577
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Entry
Igni_0577 CDS
T00587
Name
(GenBank) RNA-binding protein (consists of S1 domain and a Zn-ribbon domain)-like protein
KO
K07573
exosome complex component CSL4
Organism
iho
Ignicoccus hospitalis
Pathway
iho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
iho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Igni_0577
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
iho03019
]
Igni_0577
Messenger RNA biogenesis [BR:
iho03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Igni_0577
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
Igni_0577
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
DUF7140
Zn_ribbon_3
Auto_anti-p27
Biotin_lipoyl
Zn_Ribbon_1
EXOSC1
DZR
Cas12f1-like_TNB
Biotin_lipoyl_2
Zn_ribbon_PriA
HypA
Zn_ribbon_Nudix
Trm112p
Motif
Other DBs
NCBI-ProteinID:
ABU81759
UniProt:
A8AA07
LinkDB
All DBs
Position
complement(520166..520744)
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AA seq
192 aa
AA seq
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MPFVKNGDVVAPGDPLCVIEEYAPGPGTYEDDGIVRASIPGTVRIDTVNYVIEVRGPSAE
KKVLSPKEVVYGEVVSMRNELAQLKVARSFDEVFRARAFSAVLHISQAGKPVDSLYDVVR
PGDVVKAKVLSSPPYQLSLKGPRLGVILAYCSNCGHPLYKVGNQLQCPYCGRVEDRLISP
DYILKAKHQPKK
NT seq
579 nt
NT seq
+upstream
nt +downstream
nt
gtgccgttcgtcaagaacggtgacgtggtggcgccgggggaccctctctgcgtaatagag
gagtacgcccctggcccggggacctacgaggacgacgggatagtcagggcgagcattccg
gggaccgtgaggatagacacggtcaactacgtaattgaggtgagggggccgagcgccgag
aagaaggtgttgtctccgaaagaagtggtttacggagaggtggtgagcatgaggaatgag
ctcgcccagctgaaggttgccagaagcttcgacgaggtatttagagccagagccttcagc
gcggtcctccatataagccaagcgggaaagcccgtggatagcttgtacgacgtcgtgagg
cccggcgacgtggtcaaggccaaggttctctcttccccgccctaccagctgagcctcaag
ggcccgaggctaggggtaatactggcttactgcagcaactgcggtcatcccttgtacaag
gtgggcaaccagctccagtgcccttactgcgggagggtggaggaccgattgatctcccca
gactacatacttaaagctaagcaccagcccaagaagtaa
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