Indicator indicator (greater honeyguide): 128966828
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Entry
128966828 CDS
T11604
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
iin Indicator indicator (greater honeyguide)
Pathway
iin04140
Autophagy - animal
iin04142
Lysosome biogenesis
iin04148
Efferocytosis
iin05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
iin00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
128966828 (VPS39)
04140 Autophagy - animal
128966828 (VPS39)
04148 Efferocytosis
128966828 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
128966828 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
iin04131
]
128966828 (VPS39)
Membrane trafficking [BR:
iin04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
128966828 (VPS39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
Beta-prop_RIG_2nd
VPS18_solenoid_2nd
Beta-prop_WDR36-Utp21_1st
Lgl_C
LIF1_N
DUF4145
EcoR124_C
Motif
Other DBs
NCBI-GeneID:
128966828
NCBI-ProteinID:
XP_054236667
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All DBs
Position
4:8547790..8571282
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AA seq
875 aa
AA seq
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MHDAFEHVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIKKDAGCNRFEVTLEKSNK
NFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTISKAKGASLFTCDLQQSDTGE
EVLRMCVAVRKKLQLYFWKDREFHELQGDLSVPDVPKSMAWCENSICVGFKRDYYLIRVD
GKGSIKELFPTGKQLEPLVAPVADGKVAVGQDDLTVVLNEEGVCTQKCALNWTDIPIAME
HQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGTNIIYVASNHFVWRLIPVSI
ATQIQQLLQDKQFELALQLAEMKDDSDSEKRQQIHHIKNLFAFNLFCQKRFDESMQVFAK
LGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPGLSGAELEKAHLALIDYLTQKRSQLVKKL
NDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEE
SEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENL
HLVFSYSVWVLRDFPEDGLKIFTEDLPEVEALPRDKVLSFLIENFKSLTIPYLEHIIHVW
EETGADFHNCLIQLYCEKVQGLMKVYLNSFPAGKAPVPAGEEGGELGDYRKKLLLFLEKS
SWYEPSRLISDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTNMAENYCHKHYDRNK
DGNKDVYLSLLRMYLSPPSVHCLGPIKMEVLEPQANLQAALQVLELHHSKLDTTKAINLL
PANTQISEIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQVKCIITEEKV
CTVCKKKIGNSAFARYPNAIVVHYFCSKEVNTLDT
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgcatgacgccttcgagcatgtgccgatcctggagaagctgccgctgcagatcgactgc
ctggcggcctgggaggaatggctccttgttggtaccaaacaagggcatcttctgctttac
aggatcaagaaagacgcaggttgcaataggtttgaagtgacactagagaaatccaacaag
aacttctcaaaaaagattcagcagattcatgttgtttctcagtttaaaattctggtcagt
ctattagaaaataacatttatgtccatgacctattgacatttcaacaaatcaccacgatt
tccaaggcaaaaggggcatctctcttcacttgtgatcttcagcaatcagatacaggggaa
gaggtgctgagaatgtgtgtggcagtgcgcaagaagttgcaactttatttttggaaggac
agagagtttcatgaactgcaaggggacttaagtgtgcctgatgtaccaaagtctatggcc
tggtgtgaaaactccatctgtgtcggcttcaagagggattattatctgataagggtggat
ggaaaaggatccatcaaagaactgtttcccacagggaagcagctggaaccattggtagct
cctgtagcagatgggaaagttgcggttggccaagacgatctaacagttgtgctcaatgaa
gaaggagtctgtactcagaaatgtgccttgaattggacagatattcctatagccatggaa
caccagcctccttacatcattgctgttctgccaagatacgtggaaatccgcacttttgaa
cctcggctgctggtacagagtattgagctgcagagaccacgcttcatcacctctggaggc
acaaatattatttatgtagcaagtaatcactttgtttggcggctcattccggtgtccata
gccacacagatccagcagcttctgcaggacaagcagtttgagttggctttgcagttggcg
gaaatgaaggatgattcagatagtgagaagcgacaacaaatccaccacataaagaacctc
tttgccttcaacctcttctgccagaagcgctttgatgaatccatgcaagtttttgccaag
cttggtacagatcccactcatgtgatgggtctgtatcctgacctcctgcccacagattac
aggaaacagctacagtatcccaaccccctgccagggctctctggggcagagctggaaaag
gcacatttagctctgatagactacttaactcaaaaaagaagtcagctggtgaagaagctg
aatgattctgaccatcagtccagtacttcgccccttatggaaggaacgcccactatcaag
tccaaaaagaagctgttacaaatcattgataccaccctattaaagtgctacctccataca
aatgtagccctggtggcaccgttgctacgtctggagaacaatcactgccacattgaggag
agtgagcatgtgctaaagaaggcacacaaatacagtgagctgataatactctatgagaag
aaaggtctgcatgagaaagcattacaggtcctggtggatcagtctaagaaagccaactca
cctttgaagggtcacgagaggacagtgcagtatctgcagcatttggggacagagaacttg
cacttggtattttcctactctgtctgggtgctaagagattttcctgaagatgggctgaag
atatttacagaagacctccctgaagtggaagctttgccacgagacaaagtgctcagtttc
ttgatagaaaattttaaaagcttgactattccttatctggagcacataatccatgtctgg
gaagaaaccggtgcggacttccacaactgtctgatccagctgtactgtgagaaagtgcag
ggcttaatgaaagtgtatctcaactccttccctgcaggtaaagctccagtgcctgctggg
gaggaaggaggagagctgggggattaccggaaaaagcttctgctttttctggagaagtct
agctggtatgaacctagtcgactaattagtgacttcccctttgatggtctcctagaagaa
cgtgctctgctcttgggtcgtatggggaaacatgagcaagctctgtttatttatgttcat
attttgaaggacaccaacatggctgaaaactactgccataaacattatgacagaaacaaa
gatggcaacaaagatgtctatctgtctctgctccggatgtatctctccccacccagtgtt
cattgcctgggaccaatcaagatggaagtgctggagcctcaagccaatctgcaggctgct
ctgcaggttttggaactacatcacagcaaactggataccaccaaggcgataaacctactc
ccagcaaatacacagattagtgagattcgaatcttcttggagaaagtgcttgaagaaaat
gctcagaagaaaagatttaatcaagtactcaagaatcttctccatgcagagtttctgagg
gtccaggaggagcgaatcttgcatcagcaagtgaagtgcattattacagaggagaaggtg
tgcactgtatgtaaaaagaagataggtaacagtgcatttgctcgataccctaatgcaata
gttgtgcattatttctgctccaaagaagtcaacacattggacacctga
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