Indicator indicator (greater honeyguide): 128978602
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Entry
128978602 CDS
T11604
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
iin
Indicator indicator (greater honeyguide)
Pathway
iin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
iin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128978602 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
iin03041
]
128978602 (DDX42)
Enzymes [BR:
iin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128978602 (DDX42)
Spliceosome [BR:
iin03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
128978602 (DDX42)
Complex B
128978602 (DDX42)
Complex C
U2 SnRNP specific factors
128978602 (DDX42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
DUF460
Motif
Other DBs
NCBI-GeneID:
128978602
NCBI-ProteinID:
XP_054252521
LinkDB
All DBs
Position
37:complement(368475..389845)
Genome browser
AA seq
928 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAITPGKKEEPKLSQQSHSAFGTAGSSAAFSKSGPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVELPYIPAENSPTRQQFHSKSADSDSDDDPLEAFM
AEVEDQAARDMKRLEDKDKEKKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKV
ISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENSDRGNNNSVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLNNQ
KTGSSSAGASGWTSAGSLNSVPTSSAQQNAASPDGAAAAAPAAKGVPGFTSTGNLSSVPS
FPSGGVQGFNNTNASTNSREGGGGGGGAVRERYENRNSRHGEAPRRGEGGGRYNDLQRHG
EGGGRHSDPYRHGEGRHGDSHRHAEGRHFTEAGSGNRNSADGRNSSTEGRSNENRNGENR
KEPSSRDNKTDGFAVPEPPKRKKSRWDS
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaataaaggtggacctggtactaagagaggctttggttttggtggatttgcc
ataacacctgggaaaaaagaggagccaaagctctctcaacagtctcatagtgctttcgga
acagcgggttcctctgctgcgttctccaaatcaggacctcctcagctgccttctttctac
aaaattgggtcaaagagagcaaattttgacgaagagaatgcgtactttgaggatgaggag
gaagattccagcaatgtggaactgccatacattcctgcagagaattcccccactcgccag
cagtttcattccaaatcagcagactctgacagtgatgatgatcctctggaggcattcatg
gctgaagtggaggatcaagctgctcgagacatgaagagacttgaagataaagacaaagag
aaaaagaacgtaaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcgctacatggctgaaaaccccactgctggtgtggtgcaagaagaggaagaagataac
ttggagtatgatagtgatgggaatccaattgcaccatccaaaaaaatcattgatcctctt
ccacctattgaccactcagagattgagtacccaccctttgagaaaaacttctatgatgag
cacgaggagatcaccagtctcaccccacagcaagtggtggagttacgtcataagctaaac
ctccgggtctccggtgctgctcctccaaggcctggcagtagttttgctcattttggcttt
gatgagcaacttatgcatcaaattaggaaatctgagtatacccagcccactcctatacag
tgtcagggtgttccagttgctctgagtggcagagatatgattgggatagctaagactgga
agtggaaaaacagcagccttcatctggccgatgttgattcacatcatggaccagaaggag
cttgaaccaggggatggtcccattgcagtgattgtctgcccaaccagagagctttgccaa
cagatccattctgaatgtaaacgctttggtaaggcctacaacctgcgctctgtagctgtg
tatggaggaggcagcatgtgggagcaagccaaagccctgcaggaaggggcagagatagtt
gtctgcacaccaggtcgtttgattgatcatgtgaaaaagaaagccacaaacctccagaga
gtcacctaccttgtgtttgatgaagctgacagaatgtttgatatgggttttgaatatcag
gtcagatccattgccagccatgtacgtcctgacagacagaccctcttgttcagtgccacc
ttccgtaagaagatcgagaagctggcccgagacattctgatcgaccccattcgagttgtg
cagggagacattggagaggcaaatgaagatgtcactcagattgtggagattttcccctct
ggccctagcaaatggaactggctgactcgacgcctcgtggagttcacatcttcagggagt
gttctcctgtttgtcaccaagaaggcaaatgcagaggagctggctaataacctcaaacaa
gaggatcacaatctggggctgcttcatggtgacatggaccagagtgagaggaataaagtc
atttcagaattcaagaagaaggggatcccaatactggtggctactgatgtggcagctcgt
gggttggatattccttccattaagacagtcatcaactacgacgtggctcgggacatagac
acacacacccacaggattggtcgtactggcagagctggggagaagggagttgcctacact
ctgctgacccccaaagacagcaactttgctggtgatctcgtcagaaatctggaaggtgct
aatcaacatgtttccaaagagctgttggatctggcaatgcagaacccctggttccggaaa
tcacgtttcaaaggaggaaaaggcaagaagctgaatattggtggtggtggtttagggtac
cgagaacgacctggcctgggatcagaaaattctgaccgtggcaacaacaacagtgtgatg
agtaactacgaggcctacaagccatccacaggggccatgggggacaggctcacggccatg
aaagcagctttccagtcccaatataagagccactttgttgctgcaagcttaaataatcaa
aagactgggagttcctctgctggggctagtggctggaccagcgctgggagcttgaactcg
gtacccacgagttcagcacaacaaaacgctgcgagccctgacggcgcggccgccgccgct
cccgcagccaagggggtgccaggcttcaccagcaccgggaacttgagcagcgtccccagc
tttcccagcgggggagtccagggcttcaacaacacaaatgccagcaccaacagtcgggaa
ggcggcggcggtggcggtggcgctgtcagagaacgctatgagaaccggaacagtcgccac
ggcgaggccccgcgccgcggggaggggggcggccgctacaacgacctgcagcggcacggg
gagggcggcggccgccacagcgacccctaccggcacggcgagggcaggcacggagacagc
catcgccacgccgaaggccgacacttcaccgaggcgggcagcggcaaccgcaacagcgct
gacggcaggaacagcagcaccgaaggtaggagcaacgagaacaggaacggggagaacagg
aaggaacccagcagccgagacaacaagacagatgggtttgctgtcccggagcccccaaag
cgtaagaagagccggtgggacagttaa
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