Indicator indicator (greater honeyguide): 128981234
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Entry
128981234 CDS
T11604
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
iin Indicator indicator (greater honeyguide)
Pathway
iin03013
Nucleocytoplasmic transport
iin03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
iin00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128981234 (UPF2)
03015 mRNA surveillance pathway
128981234 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
iin03019
]
128981234 (UPF2)
Messenger RNA biogenesis [BR:
iin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
128981234 (UPF2)
mRNA cycle factors
P-body specific factors
128981234 (UPF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
128981234
NCBI-ProteinID:
XP_054255908
LinkDB
All DBs
Position
3:complement(16712794..16769693)
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AA seq
1269 aa
AA seq
DB search
MPAERKKSANMEEKESPLNNKEKEFSERRPVSTREKPKEDVKVGMKRETLKIPEDKKKKL
EEDKRKKEDKERKKKEEDKVKAEEEQKKKEEEEKKKLEEEEKKKQEEEEKKKQEEAAAQL
KEKEEAHQLHQEAWERHQARKELRSKNQNAPDNRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFNSLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLL
QAWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRES
HTHVSVVISFCRHCGDDIAGLVPRKVKTVAEKFNLSFPPSEIISPEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNIERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLD
ENMPDLPQEKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAI
LFKDNEKCSQNKDSSKDESRDSKDAKDNKEAPGSEDLELELENLDINDDPLELDCGDEAE
DLTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANR
RKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLKGDFRFHVRKKDQINIE
TKNKTVRFIGELTKFKMFSKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESH
LRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYIRKLLYK
DLSKVTTEKVLRQMRKLPWQDVEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDV
GIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGV
NPDGSPSPLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLDV
WTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEEAIRQVQDLEREFLIKLGIVNDKESKD
SITEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEEGSDNEEEEGEEEEEENTDYLTD
SNKENETDEENTEVMIKGGGLKHVPCAEDEDFIQALDKMMLENLQQRSGESVKVHQLDVA
IPLHLKSQLKKGPPLGGGEGESESGDTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQ
QQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNA
DLIFKTGGR
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgcaagaagtcagcaaatatggaagaaaaagaatctccattaaataat
aaagaaaaagaattcagtgaaaggcgaccagtgagcactagggagaagccaaaagaagat
gtcaaggttggcatgaaaagagagactttaaagattcctgaagataaaaagaaaaagctg
gaagaggataaaagaaaaaaggaagacaaggagcggaagaaaaaagaagaggataaagta
aaggcagaagaagagcaaaagaagaaagaagaagaagaaaaaaagaaacttgaagaagag
gagaaaaagaaacaagaggaggaagagaaaaagaaacaagaagaagcagctgcgcagctg
aaagaaaaagaggaagcacatcagctccatcaggaagcttgggaacgccatcaggcaaga
aaagagcttcgcagcaaaaaccagaatgcaccagacaatcgccctgaagagaacttcttc
agcagactggattccagtctgaagaagaacacggcttttgtgaagaagctaaaaaccatt
acagagcaacaaagggactccttgtctcatgactttaatagcctgaatttaagcaagtat
attgcagaagcagtagcttccattgtagaagccaaactgaaaatatcagatgtgaattgc
gctgtgcacttgtgttccctcttccaccagcgctatgctgattttgctccttcattactt
caggcttggaaaaaacattttgaagcaaggaaagaagaaaagactcccaacattaccaag
ttaagaactgatctgcgtttcattgcagaattgacaatagttgggattttcactgacaag
gaaggtctgtctttaatctatgagcagcttaaaaatattattaatgctgatcgagaatcc
cacactcatgtttctgtggttatcagcttttgtcggcactgtggagatgacattgctggt
ttggtaccaaggaaagtaaaaactgttgcagagaagtttaacttgagctttcctcctagt
gagataattagtccagagaaacaacagcccttccagaacttgttgaaggaatactttacg
tctttgaccaaacacctgaaaagggaccacagggagctacaaaatattgaaagacaaaac
aggcgcattcttcattccaaaggagagctgagtgaagatcgacacaagcaatatgaggag
tttgcaatgtcctatcagaagctgttggcaaattctcaatctttagctgatcttttggat
gaaaatatgcctgaccttcctcaagagaaaccaacacctgaggaacatggacctggtatc
gatattttcacaccaggaaagcctggagaatatgacctggaggggggtatttgggaagat
gaagatgcaagaaacttctatgagaatctcattgacttaaaggcttttgtgccagcaatt
ttatttaaagacaatgaaaaatgttctcagaacaaggattccagcaaagatgaatcaaga
gattctaaagatgccaaagataataaggaagcacctgggagtgaggatttggagttggaa
ctggagaacctggatattaatgatgaccctctggagttagactgtggagatgaggcagaa
gatcttacaaaaaagcttcttgatgagcaagaacaagaggatgaagaagccagtactgga
tctcatttaaaacttatagttgatgcttttcttcagcaacttccaaattgtgtcaacaga
gacctcatagacaaggcagcaatggatttttgcatgaacatgaatacaaaagccaacaga
agaaaactagtgcgagcacttttcatagttcccagacaaaggttggatttgctaccattt
tatgcaagactggttgccacattgcatccttgtatgtctgatgtagcagaggatctttgt
tccatgctgaaaggagatttcagatttcatgtaagaaaaaaggaccagatcaacattgaa
acaaagaataaaaccgtgagatttattggtgagcttaccaagtttaagatgttctccaaa
aatgacactctgcactgtttaaagatgcttctgtcagacttttctcatcaccatattgaa
atggcatgtactcttctggaaacctgtggaagattcctctttagatcaccagaatctcac
ttaagaaccagcgtccttttggaacaaatgatgagaaaaaagcaagcaatgcatcttgat
gcacgctatgtcacaatggtagaaaatgcctattactactgtaatccccctccagctgag
aaaactgtgaagaaaaaacgtcctcctttgcaggaatatattcgtaagcttctttacaag
gatctctccaaggtcaccacagagaaggtcttgagacagatgcgcaagctgccttggcag
gatgtagaagtaaaagactatgttatatgctgtatgatcaacatctggaatgtgaaatat
aatagtattcactgtgtagccaacctcttagcagggttggtcctttaccaggaagatgtt
ggaattcatgttgtggatggagtgctagaggatattcgactaggaatggaggttaaccaa
ccaaagtttaaccaacggcggatcagcagtgccaagtttttgggggagctttacaattac
cgaatggtggaatcagctgtaatatttcgaactctctattctttcacatcatttggtgtg
aaccctgatggcagtcctagtccactggaccctccagagcatcttttcagaatcagacta
gtttgtactatccttgatacctgtgggcagtactttgacagaggatccagcaaacgaaaa
cttgattgcttccttgtatattttcagcggtatgtttggtggaaaaaaagcctggatgtt
tggacaaaagatcacccatttcctatagacatagactatatgatcagtgatacacttgaa
ctgctgagaccaaagataaagctctgcaattctctggaagaagctatcagacaggttcaa
gacttggaacgagaattcttaataaaactaggcattgtgaatgacaaagaatccaaagat
tccattacggaaggagagaatcttgaagaggatgaagaagaggaagaaggaggagcagaa
acagaggagcaatctggaaatgaaagtgaagtaaatgagccagaagaagaggaggggtct
gacaatgaggaggaagaaggtgaagaagaagaggaggaaaacacggattaccttacagac
tccaataaggaaaacgaaactgatgaggagaatacagaagtaatgattaaaggaggagga
cttaagcatgtcccttgtgcagaagatgaagactttattcaggcactggataaaatgatg
ctggaaaatcttcagcaacggagtggtgaatctgttaaagtacatcaattggatgttgct
attcctctgcatctcaaaagtcagctcaagaaggggccgccacttggaggtggggaggga
gagtcagagtctggagacacaatgccatttgtcatgttaacacgtaaaggcaacaaacag
cagtttaagatcctaaacgtaccaatgtcttctcaacttgctgcaaaccactggaaccaa
cagcaagctgaacaggaagagagaatgaggatgaaaaagctcactttggatatcaatgaa
cggcaagaacaagaggactaccaggaaatgttgcagtctctggcacagcgtccagctcct
gcaaatactaaccgtgaacgtcggcctcgttaccagcatccgaagggagcacctaatgca
gatctaatctttaaaactggtgggaggtag
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