Idiomarina loihiensis GSL 199: K734_10025
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Entry
K734_10025 CDS
T02681
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ili
Idiomarina loihiensis GSL 199
Pathway
ili03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ili00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K734_10025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ili03019
]
K734_10025
03009 Ribosome biogenesis [BR:
ili03009
]
K734_10025
Enzymes [BR:
ili01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K734_10025
Messenger RNA biogenesis [BR:
ili03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K734_10025
Ribosome biogenesis [BR:
ili03009
]
Prokaryotic type
rRNA helicases
K734_10025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
MatB
SecA_DEAD
Flavi_DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AGM36866
LinkDB
All DBs
Position
complement(2124124..2125908)
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AA seq
594 aa
AA seq
DB search
MSNTQTGLSFNDMALPSAVLEQLNAMQFLTPTPIQLQAIPALLEGQDVLGEAQTGTGKTA
AFGLPALAKIDASVKQTQVLVVTPTRELAIQVAEALEGFAAKMRGVGVATVYGGAPFGPQ
VKALKQGTAIVVGTPGRLIDLLNKNVLQLDGLKVGVLDEADEMLNMGFIEDIETILKAVP
NTAQRALFSATMPNAIRKLAKTFLKDPLNIQIEAIAREKATIKQKAWKVQGMTKMTALTR
LLEVTPYQRALIFVRTRQDTMDVAELLQRNGFKAAPLSGDLNQAQREQTVSQLRSGHIEI
LVGTDVVARGLDVPEITHVINYDLPSDTESYVHRIGRTGRAGRTGEAILFFRAKERHLLR
HYERLTNAPVEFFEVPNANELSKYRQQQLLEKLQASLAPETASADKPKLEKLLGEWLEQS
ELSAEEIALALLAQHNEQRPLFLKEDRPVREARNERSERSGRNERSDRGDKRKPRAERGG
RAADVDFETYKIQVGREHGARPGDIVGAIANEASMDSKYIGQIQLFDNHSLVQLPKGMPK
DIMHVLKKARVRQQPMGLELSDEQVKRAPRPPRDRDARGGPKRNSGKGAARRFS
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaatactcaaacgggtctgtcgtttaacgacatggccttacctagtgctgtgctt
gaacaattaaacgcaatgcagtttttaactccgactcctattcagctacaggctattcct
gcattgctggaagggcaagacgtgctgggcgaagctcagaccggtaccggtaaaactgct
gcattcggtctgcctgcactggcaaaaattgatgcgtcggttaagcaaactcaagtatta
gtcgtaactccaactcgtgagctggctattcaggtagctgaagcgcttgaaggctttgct
gcgaaaatgcgtggcgttggcgtagcaaccgtttacggtggcgctccatttggtcctcag
gttaaagccctgaagcagggaaccgctattgttgttggtaccccgggtcgtcttatcgac
ttattgaataaaaacgtcctgcaactagatggtttgaaagtgggcgttctggatgaagct
gatgaaatgcttaacatgggtttcattgaagacatcgagacgattctaaaagctgtaccg
aatacggcgcaacgcgcgttattctcagcaactatgccgaatgcaattcgcaaactggca
aaaactttcctgaaagatccgctgaacattcagattgaagctattgcccgcgaaaaagcg
acgattaagcagaaagcatggaaagttcagggcatgacgaaaatgaccgctctgactcga
ttgttagaagtgactccgtatcagcgcgcactgattttcgtacgtacccgtcaggatacg
atggatgtggctgaattattgcaacgcaacggatttaaagcggcgccattaagcggtgac
ttgaaccaggctcagcgtgagcagactgtcagtcagttacgtagtggacacatcgaaatt
ctggtagggaccgacgttgttgctcgtggcttagacgttcctgaaattacgcacgttatt
aactatgacttaccaagcgatactgaatcttatgttcaccgtattggacgtactggtcgt
gcgggccgtaccggtgaagcgattcttttcttccgtgcaaaagaacgtcatttgttgcgt
cactatgagcgcttaaccaatgcaccggttgagttctttgaagtaccaaacgcaaatgaa
ctgagcaagtaccgtcagcaacaattgttagagaagttgcaggcgtcactggctcctgaa
actgcaagcgccgataagcctaagctagagaaactgttaggcgagtggctggaacagtca
gagttaagtgctgaagaaattgctttagcgttattggctcagcataatgagcagcgcccg
ttgttcctgaaagaagaccgtccggtacgtgaagcacgcaacgagcgtagcgaacgctca
ggtcgcaatgaacgcagtgaccgtggcgataagcgtaaacctcgtgccgaacgtggtggt
cgtgcagcggatgtcgattttgaaacctacaaaattcaggtaggccgtgagcacggcgct
cgtcctggtgacatcgttggtgctattgctaacgaagcatcaatggacagcaagtatatt
gggcaaattcagttgtttgataatcattctttagtgcagctaccaaaaggtatgccaaaa
gacattatgcacgtactgaaaaaagctcgtgtgcgtcaacagcctatgggtcttgagcta
agtgatgagcaagttaaacgtgcgccacgcccaccgcgtgaccgcgatgctcgtggcgga
cctaagcgcaactccggtaagggtgctgcgcgtcgttttagttaa
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