Idiomarina loihiensis GSL 199: K734_12815
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Entry
K734_12815 CDS
T02681
Name
(GenBank) superfamily II DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ili
Idiomarina loihiensis GSL 199
Pathway
ili03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ili00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K734_12815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ili03019
]
K734_12815
03400 DNA repair and recombination proteins [BR:
ili03400
]
K734_12815
Enzymes [BR:
ili01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K734_12815
Messenger RNA biogenesis [BR:
ili03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K734_12815
DNA repair and recombination proteins [BR:
ili03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
K734_12815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
NAD_binding_6
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AGM37422
LinkDB
All DBs
Position
complement(2731189..2733033)
Genome browser
AA seq
614 aa
AA seq
DB search
MHSSTAEKAQFDPLKQQLESTFGYHQFRDGQEDIMQAAMQGRDSLVLMPTGGGKSLCYQL
PAICGDGLTLVISPLLSLMQDQVEALKALDISAATLHSGVSSQESMATMQGLQSGDIKLL
YVSPERVLQPTFIERLQTLKLNFIAVDEAHCISQWGHDFRPEYGKLGVLRNYLPNVPFMA
LTATADSATQHDIIERLCLREPLVHRSSFDRPNIRYVVQEKYKPLKQVRDYVKKQKGAAG
IIYCGSRKKTEELSESLQQAGVRAAPYHAGIEHQIKESTLRQFLRDDIDVVVATVAFGMG
INKPNIRFVIHFDIPRSVESYYQETGRAGRDGLPAEAVMLYDPRDAQWIRRMIEDQENEQ
RRLVEAQKFSAMQAMAEAQTCRRLVVLNYFNEYSDKECGNCDLCLDPPQRYDGLEDAQKA
LSCVYRVGQQFGINHVVEVLRGSKAQRVLELGHDQLSTYGLGKSETQEHWFSVLRQLIHR
GLILQDIRRFAALQLTDAARPVLKGEVPLELAKPRIELTATKTRITDRGDYNKILFRRLR
KLRKDIADRDQVPPFVVFSDAALVEMCVHYPTTAKDMLEINGVGEVKLARYGNEFMQAVE
AFLSGASERQLFNG
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgcacagcagtaccgccgaaaaagcacaatttgatccgcttaagcagcagcttgaatct
acctttggctatcatcagtttcgtgatggccaagaggatattatgcaggccgctatgcaa
gggcgtgactctctggtgctgatgccaaccggcggcggtaagtcgctgtgctaccagttg
ccggctatttgtggtgacggccttaccctggttatttcaccgttactgtcgttaatgcag
gatcaggtcgaggcacttaaagctctggatatttccgcggcgacgctgcattccggggtg
tcatcgcaagaatctatggcaaccatgcaagggcttcagagcggtgacattaagctgctt
tatgtaagtccagagcgggttttacaaccaacctttattgaacgcctgcaaaccttaaag
ctgaattttattgcggtggatgaagcccactgtatcagccaatggggacatgacttccgg
cctgaatacggcaaactcggagtactgcgtaattacctgcccaatgtgccttttatggca
ttaacggcaaccgcagactctgccacccagcacgacattattgaacggctgtgtctgcgc
gaacctctggtgcatcgcagctcgttcgaccgtcccaatattcgttacgtggtgcaggaa
aagtacaagccgctgaagcaggttcgtgactacgttaaaaagcaaaaaggcgccgccgga
attatttactgcggcagccgcaaaaaaaccgaagagctgtcggaaagtctgcagcaagcc
ggggtgcgcgctgcaccctaccatgccggtattgagcaccagataaaggaaagcaccctg
cgccagtttctgcgtgacgacatagatgttgttgttgcgacggtggcctttggtatgggt
attaataagcccaacattcgttttgtcattcattttgatattccccgcagcgttgaatct
tactatcaggaaaccgggcgtgctggccgagatggtctgccagccgaggctgtcatgctt
tatgacccgcgcgacgcgcaatggatacgacgcatgatagaagatcaggagaatgagcag
cggcgcttggtcgaggcgcaaaagttttcagctatgcaggctatggcagaagcgcagacc
tgccggcggctggtggtgttgaattattttaatgaatactcggataaggaatgcggaaac
tgcgatttgtgtctggatccgccccagcgctacgacggtctggaagacgctcaaaaagca
ctgagctgtgtataccgagtcggtcagcagtttggtattaaccatgtagttgaggttttg
cgtggttcaaaagcccaacgtgttctcgagctgggacacgaccagttgagcacgtacggc
ttaggcaagtcggaaactcaggagcactggttttcggtgttacggcagctcattcaccga
gggcttattctgcaggacattcggcgttttgcagcacttcagctcactgatgcagcccgc
cctgtgttaaaaggcgaagttccgctggaactggctaagccgcgaatagaattaactgca
accaaaacccgaattaccgaccggggtgactataataaaattttgttccggcgtttgcgt
aagttgcgtaaagacattgctgaccgtgatcaggtgccgccttttgtggtgttcagtgat
gcggcactggtggaaatgtgcgtacactatcccacaacagccaaagatatgttagaaatc
aatggtgttggagaagttaaactggcacgttatggcaatgagtttatgcaggccgtggaa
gctttcttgtccggagccagcgagcggcaattatttaacgggtaa
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