Idiomarina loihiensis L2TR: IL0025
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Entry
IL0025 CDS
T00218
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
ilo
Idiomarina loihiensis L2TR
Pathway
ilo03030
DNA replication
ilo03410
Base excision repair
ilo03420
Nucleotide excision repair
ilo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ilo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IL0025 (polA)
03410 Base excision repair
IL0025 (polA)
03420 Nucleotide excision repair
IL0025 (polA)
03440 Homologous recombination
IL0025 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ilo03032
]
IL0025 (polA)
03400 DNA repair and recombination proteins [BR:
ilo03400
]
IL0025 (polA)
Enzymes [BR:
ilo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
IL0025 (polA)
DNA replication proteins [BR:
ilo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IL0025 (polA)
DNA repair and recombination proteins [BR:
ilo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
IL0025 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IL0025 (polA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
WHD_BrxR
HHH_2
HHH_5
DUF5997
DUF8170
PA1414
Motif
Other DBs
NCBI-ProteinID:
AAV80869
UniProt:
Q5QXJ2
LinkDB
All DBs
Position
27587..30352
Genome browser
AA seq
921 aa
AA seq
DB search
MATSVPENPFILVDGSSYLFRAFHAPPHLTNSKGEPTGAIYGVVNMLRSLLKRYKPSHMA
VVFDAKGKTFRSDIYQDYKANRPPMPDDLRSQIKPLHDIVQAMGLPLLCIDDVEADDVIG
TLARQAGDKGRFTLISTGDKDMAQLVNEHVMLINTMTDTLMDPEGVEKKFGVKPNQIIDY
LALMGDSSDNIPGLPKVGEKTAQALLQSIPSIDAIYENVDAVTELSFRGAKSMPAKLNEY
KEQLLMSRELATIKLDVAMDLQPEELKIQTADSEKLQELYSRCEFRRWLDELMETGAATN
QVLGETDGEKPTSDINRDAYGVLMTEKEVSDYITQLNKFDYFAFDTETTSLNYMEAELVG
VSLAMAPGEAVYIPVGHDYMEAPDQVGRDWLLEQLKPLLEAEKPQKVGQNLKYDSHILRR
YKIRLAGILNDTMLASYVFNSVGSRHDMDTLSLHYLNHKTISFEDIAGKGAKQLTFNQIA
LEQAGPYAAEDADITYRLHDVLWNKVKETGSELQSVLTDIEVPLVPILCDMEQYGVRIDA
NLLGKQSQEIAEKLDALEKKAFEIAGEEFNLGSPKQLQRIFFEKLELPIVKKTPKGAPST
AEEVLHELAHDYPLPDVILQHRGLSKLKSTYTDKLPKMINPDTGRVHTSYQQAVTATGRL
SSTDPNLQNIPIRTAEGRRVRQAFIPEQGYKIVAIDYSQIELRIMAHLSQDESLLKAFAE
GLDIHRATAAEVFGCKADEVSNDQRRQAKAVNFGLIYGMSAFGLARQLGIARHEAQHYMD
KYFERFPGVLRYMEDTRKQAKEQGYVKTLFGRRLPLPDIKASNGARRKGAERAAINAPMQ
GTAADIIKKAMLKVADWIDSNNCQDDVRMLMQVHDELVFEIKESKLTDYIEQLTEVMEKA
ASLDVPLIAEAGKGNNWDEAH
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atggccacatctgttccagaaaatccttttattcttgtcgatggttcttcttatttgttc
cgcgcttttcatgcgccgccgcatttaaccaactcaaaaggtgaaccgaccggagctatt
tacggcgtggttaatatgctccgaagcctgctaaagcgctataaacccagccatatggcg
gtagttttcgatgccaaaggcaaaacctttcgtagcgacatttaccaggactacaaagca
aatcgtccgcctatgccagacgatctgcgaagtcagatcaaacctttgcatgacattgtc
caggctatgggtttaccgctgctttgcattgacgatgttgaagccgatgatgttattggc
acgctggcgcgccaggccggcgacaagggtcgctttacgctgattagtaccggcgataag
gacatggctcaactggtcaatgaacacgtcatgctcattaacaccatgaccgatacttta
atggaccctgaaggggttgagaaaaagtttggggttaagccaaaccaaattatcgattat
ttagcgcttatgggtgacagctcggacaatattccaggcttgcccaaagtgggcgaaaag
acagcacaggcactgctgcaaagtattcccagcattgacgctatttacgaaaatgtagat
gcagtgactgagctttcgttccgtggcgccaagtctatgccggctaagcttaatgaatat
aaagaacagctgctgatgtcgcgtgagctggcgaccattaagctcgatgtggcaatggac
ttacaaccggaagagttgaaaatacagacggcagacagcgaaaaactgcaggagctctac
agtcgttgtgaattccgccggtggcttgatgagctgatggaaactggtgcggcaacgaat
caggtgctgggtgaaaccgatggcgaaaaaccgaccagcgatataaacagagacgcgtac
ggtgtattgatgactgaaaaagaggtcagcgattacataacgcaactgaataaatttgat
tactttgcctttgataccgaaacaaccagccttaattatatggaagctgaactggttggt
gtgtcgttagccatggcacctggcgaagctgtgtatatacctgtcgggcatgattatatg
gaagcgccggaccaggttggccgggactggttactggagcagttaaagcctttacttgaa
gctgaaaagccgcaaaaagtggggcaaaacctgaaatacgactcgcatattctgcgtcgc
tataaaattcgtctggcggggattttaaatgacaccatgcttgcctcctacgtgtttaac
agtgttggttcgcggcatgatatggataccttaagcctgcattatctgaatcacaaaacc
attagttttgaagacattgcaggtaagggtgctaagcaactgacgtttaaccagattgct
ttagagcaggcggggccttacgcggctgaagatgccgacattacttaccgactgcatgac
gtgctctggaataaagtaaaagaaaccggcagtgagctgcaaagtgttcttaccgacatt
gaagtgccgttagtaccgatattgtgcgatatggagcaatacggcgtgcgcattgacgca
aacttgctgggtaagcaaagccaggaaattgcggaaaagctcgatgccctggaaaaaaag
gcttttgaaattgccggcgaggagttcaacctgggctcgccgaaacagctgcaacgcata
ttcttcgaaaagcttgagttgccaattgtgaagaaaacgccaaaaggcgcgccgtcaacg
gctgaggaagttttgcacgagctggcacatgactaccccttgccggatgtgatactgcag
catcgcggcttgtcgaagcttaaatcaacctataccgacaagttaccgaagatgattaac
cccgatacagggcgcgtacacacctcgtaccaacaggcggttaccgcaaccgggcgtttg
tcttcaacagaccctaacctgcagaatattccaattcgtaccgccgaagggcgcagagtg
cgtcaggcctttattcctgagcaaggctataagattgtcgctatcgactatagccagatt
gaactgcgcattatggcgcacttgtcgcaagatgagtctttgcttaaagcctttgccgaa
ggcctggatattcaccgtgcgacagcggccgaagtgtttggctgtaaggctgatgaagtc
agtaatgaccagcgccgtcaggcaaaagcggtgaacttcgggctaatttacggtatgtca
gcctttggactggcgcggcaactgggtattgcccgtcatgaagctcagcactatatggac
aagtattttgaacgcttccctggagttttgcgttacatggaagatactcgcaagcaggca
aaagagcagggctatgttaaaaccctgtttggacgtcgtttacccttgccggatataaaa
gccagtaacggagcccgtagaaaaggggcggaacgtgcagctatcaatgcgccaatgcag
ggcactgcagcggatatcattaagaaagctatgctgaaagttgccgactggattgacagt
aataactgtcaggatgatgtgcgtatgctaatgcaagttcacgatgaactggtgtttgaa
ataaaagagtcgaaattaacggattatattgaacaattaactgaagtaatggaaaaggct
gcaagccttgatgtgcctttaatagcggaagctggtaaaggtaataactgggacgaagct
cattaa
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