Idiomarina loihiensis L2TR: IL0345
Help
Entry
IL0345 CDS
T00218
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ilo
Idiomarina loihiensis L2TR
Pathway
ilo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ilo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IL0345 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ilo03021
]
IL0345 (rpoB)
03400 DNA repair and recombination proteins [BR:
ilo03400
]
IL0345 (rpoB)
Enzymes [BR:
ilo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IL0345 (rpoB)
Transcription machinery [BR:
ilo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IL0345 (rpoB)
DNA repair and recombination proteins [BR:
ilo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IL0345 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
AAV81188
UniProt:
Q5QWA5
LinkDB
All DBs
Position
353652..357680
Genome browser
AA seq
1342 aa
AA seq
DB search
MAYSYSEKKRIRKDFGKRPQVLEVPYLLSMQLDSFKKFIEVDPEANNGLEAAFRSVFPIA
SYSGTAELQYVSYHMGEPAFDVEECQIRGITYSAPLRVKLRLVLFDKEAAAGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKSHSSGKVLYNARVIPYR
GSWLDFEFDPKDNVFVRIDRRRKLPASIILRALEYSTEEILDMFFDTTYFEILKTKVKMQ
LVPERLRGETAKFDIKGAEGEVLVEKGRRITARHIRQLEQLDIKEMEVPAEYMVGKVLAK
DYANKKTGEVVGHANDVLTLELIAELSEAGIKKIETLFVNDLDHGPYMSETLRVDSSNNR
LEALVEIYRMMRPGEPPTREAAETLFDNLFFSEERYDLSTVGRMKFNRRLGREDLSGDNT
LSREDIVEVMKKLIEIRNGLDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL
SLGDLDNTMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT
RERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLSTFSRTNEYGFLETPYRRIENGSV
TDDVDYLSAIEEGNYVIAQANVGLNDKGELTEDLVPCRHKNEFTLMSKEQVQYMDVAPQQ
IVSIAASMIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGIERTIAVDSGVTVVAK
RGGVVDYVDASRIVVKVNEEEMVPGEAGIDIYNLTKYTRSNQNTCINQKPTVNPGEPVTR
GDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILISERVAQEDRMTTIHIQELNCV
ARDTKLGAEEITSDIPNVGESALGKLDESGVVYVGAEVNGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDSSLRVPNGVNGTVIDVQVFTRDGVEKDKRAVAIEEMQLAKVKKD
LTEEFKILEEGIYNRARNLLLSNGFDEAKLASVDRSSWLTQDLGNEDAQAQLEQIAEQYQ
QIRDDFDTKFETKRRKITQGDDLAPGVLKIVKVYLAVRRSIQPGDKLAGRHGNKGVISTI
IPVEDMPHDDEGNPVDIVLNPLGVPSRMNIGQILETHLGMAARGIGSKIEKMLKQQRAIS
ELRDFLQQVYDLGESRQKVDITEFTDDEVMRLAGNLKAGLPTATPVFDGAVEEEIKALLK
LADLPESGQIRLFDGRTGDKFERDVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDNNLQMEAGMP
ESFNVLLKEIRSLGINIELEQN
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggcgtactcctactctgaaaaaaaacgtattcgtaaggatttcggtaaacgacctcag
gtcttagaagttccttatttgctgtctatgcagcttgattcatttaagaaatttattgaa
gtcgatccagaagccaataatggtctggaagcggcttttcgttcggtctttcctattgcc
agttattctggtactgcggaactacagtacgtcagttatcacatgggtgagccggcgttt
gacgttgaagaatgtcagatccggggcattacctactcagcaccattgcgtgtgaaactg
cgtctggtgctgtttgataaagaagcagctgccggtacagttaaagacattaaagaacaa
gaagtgtacatgggcgaaattccgttaatgacagaaaacggaaccttcgttatcaatggc
acagagcgagttatcgtttctcagctccaccgttcacctggtgtgttctttgatcacgac
aaaggtaaatcacactcgtcaggtaaagtcctgtataacgcgcgtgttattccttaccgt
ggctcttggttggattttgaatttgatcctaaagacaacgtttttgtacgtatcgaccgt
cgtcgtaaattaccggcgtcaattattcttcgtgctctggaatacagcactgaagaaatt
ctcgatatgttcttcgacacaacgtactttgaaatccttaaaactaaggtgaaaatgcag
ttggtgcctgagcgtctgcgtggcgagaccgccaagttcgacatcaaaggtgctgaaggc
gaagtactggtcgaaaaaggccgtcgtattaccgcacgtcacatccgccagttggagcaa
ctggacattaaagagatggaagtgccggcagaatacatggtcggaaaagtattagcgaaa
gactacgcgaataagaaaactggcgaagtggtcggtcacgcgaatgacgtgctgacactt
gagcttatcgccgagcttagcgaagcgggtattaagaaaattgaaacgctgttcgttaac
gatttggatcacggtccatacatgagcgaaaccttacgcgttgattcaagcaacaaccgc
ttagaagctttggttgaaatctatcgcatgatgcgtccgggcgagccgccaacacgcgaa
gccgccgaaactctatttgataacctgttcttcagcgaagaacgttatgacttatcaact
gttggccgcatgaagttcaaccgtcgtttgggtcgtgaagacttaagcggtgataacacg
ttgtccagagaagacatcgtcgaagtcatgaaaaaacttatcgaaatccgtaacggttta
gatgaagttgatgacattgaccacctgggtaaccgtcgtatacgttcagtcggcgaaatg
gcagaaaaccaattccgtgtcggtttggtacgtgtagaacgcgcagtaaaagaacgcttg
tcgctgggtgacttagacaacaccatgcctcaagacctgattaacgcgaagccaattagt
gctgcggttaaagagttctttggttcaagccagctgtcgcaatttatggaccagaacaac
ccattgtcagaagtgacgcataagcgtcgtatctctgctttaggtccgggtggtttgact
cgtgaacgtgccggtttcgaagttcgtgacgtacatccaacgcactatggtcgtttgtgt
ccgattgaaactccagaaggcccgaacatcggtctaatcaactcgctgtcgactttctca
cgtacgaatgaatatggcttcttggaaacgccttatcgtcgtattgagaacggctctgtt
acagacgacgttgactatttgtccgcaatcgaagaaggcaactacgttatcgcccaggcg
aacgtaggtctgaacgataaaggcgagttgactgaagatttggtaccttgccgccataaa
aacgaatttacgctgatgagtaaagagcaagtccagtacatggacgttgcacctcagcaa
atcgtttctatcgcagcaagtatgatcccgttccttgaacacgatgatgctaaccgagcc
ttgatgggctcgaacatgcaacgtcaggccgttcctacattgcgcgctgataagccgctg
gtcggaaccggtatcgaacgcactatcgcagttgactccggtgttaccgttgttgctaag
cgtggtggtgttgtcgattacgtagacgccagtcgtatcgtggttaaggttaacgaagaa
gagatggtcccgggtgaagcgggcatcgacatttataacctgactaaatacacgcgctct
aaccagaacacttgtattaaccaaaaaccaaccgtgaacccaggtgaacctgtaacacgc
ggtgacgttttagctgatggtccgtcaactgacttaggtgaattagcactgggtcagaac
atgcgtgtggccttcatgccttggaatggttataacttcgaggattcgattctgatttct
gagcgcgtagcgcaagaagatcggatgacaaccatccatattcaagaattaaactgtgtt
gctcgtgataccaagttgggtgctgaggagattacctctgatataccaaacgttggtgag
tctgcattaggtaagctggatgaatccggtgttgtttatgtcggtgcagaagttaatggc
ggcgacattctggtcggtaaagtcacccctaaaggtgaaacgcagttaacgccggaagag
aaactcttgcgagctatcttcggtgagaaagcgtctgatgtaaaagacagctctctgcgt
gtaccaaatggtgtcaacggtacagttattgacgtacaagtattcactcgtgatggcgtt
gaaaaagataagcgcgcggtagcgattgaagaaatgcagctggctaaggttaagaaagac
ctgacagaagaattcaagattcttgaagaaggtatttacaaccgagctcgcaacttgttg
ttaagtaatggctttgatgaagcaaaactggcgagcgtcgatcgctcaagctggttgact
caggacttaggcaacgaagacgcacaagctcaattagagcaaattgctgagcagtaccag
caaattcgtgacgacttcgacactaagtttgagactaagcgtcgtaagatcactcaaggc
gatgatttagcgccgggtgttctgaaaatcgttaaggtttacttagccgtacgccgtagt
atccagcctggtgataaactggctggccgtcacggtaacaaaggtgttatctcaaccatc
attcctgtggaagatatgccacacgatgatgaagggaacccggtcgatatcgtattgaac
ccgctgggtgtaccttcgcggatgaacatcggtcagatcctggaaacacacttaggtatg
gcggctcgcggtattggtagcaagatcgaaaaaatgctgaaacagcaacgtgctatctct
gaattacgcgactttttacagcaggtgtacgacttgggcgaaagccgtcagaaagtagac
attactgagtttactgatgatgaagtgatgcgcttagccggtaacttgaaagccggtctg
ccaacagctacacctgtatttgatggtgcagttgaagaagaaattaaggcactgttgaag
cttgcagacttacctgaatctggtcagattcggttattcgacggccgtacgggtgataaa
tttgaacgtgacgtaaccgttggttacatgtacatgctcaaactgaaccacttggtcgac
gataaaatgcacgcacgttcaactggctcgtacagcttggttactcaacaaccactgggt
ggtaaagctcagtttggtggtcagcgcttcggtgagatggaagtctgggcattggaagca
tatggtgcggcttataccttgcaagaaatgttgacagttaagtcggacgacgtgaacggt
cgtacgaagatgtacaaaaacattgtcgacaacaacttgcagatggaagcgggcatgccg
gaatccttcaacgtattgttgaaagaaatccgctcgctgggcatcaatatcgagctagaa
cagaactaa
DBGET
integrated database retrieval system
