Idiomarina loihiensis L2TR: IL1002
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Entry
IL1002 CDS
T00218
Symbol
hupB
Name
(GenBank) Bacterial nucleoid DNA-binding protein HU-beta
KO
K03530
DNA-binding protein HU-beta
Organism
ilo
Idiomarina loihiensis L2TR
Brite
KEGG Orthology (KO) [BR:
ilo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ilo03032
]
IL1002 (hupB)
03036 Chromosome and associated proteins [BR:
ilo03036
]
IL1002 (hupB)
03400 DNA repair and recombination proteins [BR:
ilo03400
]
IL1002 (hupB)
DNA replication proteins [BR:
ilo03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
IL1002 (hupB)
Chromosome and associated proteins [BR:
ilo03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
IL1002 (hupB)
DNA repair and recombination proteins [BR:
ilo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
IL1002 (hupB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
NolB
HU-CCDC81_euk_2
Motif
Other DBs
NCBI-ProteinID:
AAV81842
UniProt:
Q5QXP1
LinkDB
All DBs
Position
complement(1068108..1068380)
Genome browser
AA seq
90 aa
AA seq
DB search
MNKSQLIDKIAAGADISKAAAGRALDSMIDAVTDALKKDDQVALVGFGTFSVRERSARTG
RNPQTGETIQIAAAKVPSFKAGKALKDAVN
NT seq
273 nt
NT seq
+upstream
nt +downstream
nt
gtgaacaagtctcagcttattgacaaaatcgcggcaggtgcagatatttctaaggctgct
gctggtcgtgctctggactctatgatcgatgcagtaactgatgctctaaaaaaagatgac
caagtcgcattagttggcttcggtacgtttagcgtgcgtgagcgttctgctcgtactggt
cgtaaccctcaaacgggtgagactattcagatcgctgctgctaaagttccttcttttaaa
gcaggtaaagcactgaaagacgcagtaaattaa
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