Idiomarina loihiensis L2TR: IL1010
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Entry
IL1010 CDS
T00218
Symbol
topA
Name
(GenBank) Topoisomerase IA
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ilo
Idiomarina loihiensis L2TR
Brite
KEGG Orthology (KO) [BR:
ilo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ilo03032
]
IL1010 (topA)
03400 DNA repair and recombination proteins [BR:
ilo03400
]
IL1010 (topA)
Enzymes [BR:
ilo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
IL1010 (topA)
DNA replication proteins [BR:
ilo03032
]
Prokaryotic type
DNA Topoisomerases
IL1010 (topA)
DNA repair and recombination proteins [BR:
ilo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
IL1010 (topA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_2
Toprim_4
DUF7351
Ribosomal_L10
DUF7838
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
AAV81850
UniProt:
Q5QWH4
LinkDB
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Position
complement(1077300..1079918)
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AA seq
872 aa
AA seq
DB search
MAKSLVIVESPAKAKTINKYLGKDFVVKSSVGHVRDLPTRATETIKSKPAAEVRKMSPDA
KAKYQKERDYKRLIARMGVDPENDWEAHYEVLQGKEKVVKELKQLAKKSDEIILATDLDR
EGEAIAWHLRELIGGDDSRYKRVVFNEITKKAIQEAFQHPAELNTDRVNAQQTRRFLDRV
VGFMVSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEYWDVHADLNTPADESL
RMQVMKQAGKNFRPSNKQETDAALALLKKAGYEITGREDKPTSSKPSAPFITSTLQQAAS
TRLGFGVKKTMMMAQRLYEAGHITYMRTDSTNLSSEAVDACRELITKDFGKNYLPDDPVR
YGAKSNAQEAHEAIRPSDVKVKSESLASVERDAQRLYELIWRQFVACQMVPARYDSTTLT
ATAGDFELKARGRVMRFAGWTKVMPPASSKKDGDATLPDVKKGDALQLEKLNPEQHFTKP
PARYGEASLVKELEKRGIGRPSTYASIISTIQDRGYVRVESRRFFAEKMGEIVNDRLIEN
FTELMNYNFTAEMEQALDDIAAGKRDWKETLDKFYADFKERLEKAELEPTEGGMRENSMV
LTDIDCPECGRKMGIRTASTGVFLGCSGYNLPPKERCTKTLNLTPGEEAIEVTDEEERET
EALRAKKRCPKCGTAMDSYLIDEKRKLHVCGNNPTCDGQLVEEGTFRIKGYDGPTIECDK
CGSEMQLKTGRFGKYFGCTNSECKNTRKLLRSGEAAPPKEDPVPLPELPCEESDAYFVLR
DGASGIFLSANTFPKSRETRAVTVKELAKFKDRLPEKFKYLAEAPKEDDDGNDAIVRFSR
KNKEQYVVTEIKKKQTGWKAFYRSGKWQVEEK
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaatcgctcgtcattgtcgagtctccggcaaaagccaaaacgattaataagtat
ttaggtaaggactttgtcgttaagtccagtgttggtcatgtccgtgatctgcctacccgt
gccactgagacaataaagagtaagccggctgcagaagtacgcaagatgtcgccggatgct
aaggcaaaataccagaaagaacgtgattataagcgactgattgctcgtatgggggttgac
ccggaaaatgactgggaagcgcattacgaggttctgcagggaaaagaaaaagtcgttaaa
gagctaaaacagttagccaaaaagtcagatgaaattattctggcaacggatttggaccgc
gagggggaggcgatagcctggcacttgcgggaacttattggtggtgatgactcgcgatat
aaacgcgtggtgtttaacgaaataacgaaaaaagccattcaagaagcttttcaacatccg
gcagagctgaacaccgaccgggttaatgcgcagcagacccgacgtttcctggatcgggtc
gttggttttatggtgtcgcccttgttgtggaagaaaatcgcccgagggttgtcagcagga
cgtgtccaatctgtcgctgtaaggcttgtggttgaacgtgagcgtgaaattaaagccttt
gtaccggaagagtactgggacgttcatgcagacttaaacacgcctgcggacgagtctctg
cgcatgcaggtgatgaagcaggctggtaagaacttccgtccgtccaataaacaggaaacg
gacgcagctttagcactactgaaaaaagccggctatgaaattaccgggcgtgaagataag
ccaacgtccagtaaacccagtgcgccttttattacctcgactctgcagcaagccgccagt
acccgattaggctttggcgttaagaaaaccatgatgatggctcagcgtctgtatgaagca
ggccacattacgtacatgcgtaccgattcaaccaatttaagttctgaggctgtcgatgct
tgtcgtgaattaattaccaaggactttggtaaaaattatttaccggacgatcctgttcgc
tatggtgcaaaaagtaacgcacaggaagcgcacgaagcgatacgtccgtcagatgtgaag
gttaagtcagagtcactggcttctgtggagcgagacgcgcagcgtttgtatgagttgatt
tggcgtcagtttgtggcctgccaaatggtaccggctcgatacgatagtaccaccctgacg
gcaaccgccggcgattttgaattgaaagctcgcggacgtgtgatgcggtttgccggttgg
actaaggtgatgcctccggccagtagtaaaaaagacggtgatgcgaccttgcctgatgtg
aaaaaaggcgatgcattacagctggagaaactgaatccggaacaacactttactaagcca
ccggcgcgttatggtgaggcttctctggtcaaagaactggagaaacgaggcattggtcgt
ccatcaacttatgcttcaattatttctaccattcaggatcgcggttatgttcgggtggag
agccgtcgtttctttgccgagaaaatgggtgaaattgtcaatgatcggttgattgagaac
ttcactgagctaatgaattataactttacggcagaaatggaacaggcgctggatgatatt
gctgccgggaaacgtgactggaaagagactctggataagttttatgcagactttaaagag
cgcctggaaaaagcagaactggaaccgactgagggcggcatgcgtgagaacagcatggtt
cttaccgatatcgattgccctgagtgtggtcgtaaaatgggaataagaacagcgtccacg
ggcgtattccttggctgttctggctataacttaccgcccaaagaacgttgtaccaaaacg
cttaacctgacaccgggcgaagaagcgatagaggtgactgacgaagaagagcgcgaaaca
gaagcgcttcgtgccaaaaagcgttgccctaagtgtggcaccgcaatggacagttacctt
attgacgaaaagcgtaagcttcatgtttgtggtaacaacccaacatgtgacggtcaactg
gttgaagaggggactttccgcattaaggggtatgacggacccaccattgaatgcgataag
tgtggttctgaaatgcagttaaaaacgggacgttttggtaagtacttcggctgcactaac
agtgagtgtaaaaacacccgaaaattactgcgaagcggggaagctgcgccaccgaaagaa
gacccagtgccgttgcctgagttaccttgtgaagagtcggatgcttactttgtgctaaga
gacggtgcctccggtattttcctgtctgccaataccttccctaaatcgagagaaactcgg
gcagttacggtaaaagaactggctaagtttaaagatcgtttaccggaaaaattcaagtac
ctggctgaagcccctaaagaagatgatgacggtaatgatgctattgttcgtttttcaaga
aagaacaaagaacagtacgttgttactgaaattaagaagaaacaaacgggctggaaggct
ttttaccgcagtggtaaatggcaggtagaagaaaagtag
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