Idiomarina loihiensis L2TR: IL1349
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Entry
IL1349 CDS
T00218
Symbol
rne
Name
(GenBank) RNase E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ilo
Idiomarina loihiensis L2TR
Pathway
ilo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ilo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IL1349 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ilo03019
]
IL1349 (rne)
03009 Ribosome biogenesis [BR:
ilo03009
]
IL1349 (rne)
Enzymes [BR:
ilo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
IL1349 (rne)
Messenger RNA biogenesis [BR:
ilo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IL1349 (rne)
Ribosome biogenesis [BR:
ilo03009
]
Prokaryotic type
rRNA processing factors
IL1349 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AAV82189
UniProt:
Q5QZ44
LinkDB
All DBs
Position
1447822..1450764
Genome browser
AA seq
980 aa
AA seq
DB search
MLINATQLEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE
RHGFLPLKEIAKTYFPQGYTFQGRPNIKDVVKEGQEVIVQIDKEERGQKGAALTTFVSLA
GSYLVLMPNNPRAGGISRRIEGDERSALKEALSDLNVPKEMGLIVRTAGVGKSKEELEWD
LNVLLNHWEAISKAADERPAPFLIHQESNVIFRALRDYLRRDIGEVLIDSPKVYEQVRSH
IQLIRPDFLQRVKQYEGDVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDI
NSSRATKGGDIEETALQTNLEAAEEIARQLRLRDVGGLVVIDFIDMTPARHQRDVENRLR
DSLSQDRARIQVARISRFGLMEMSRQRLRPSLGESANNVCPRCNGQGTIRSSDSLALSIL
RLIEEEAIKDNTIQVHAQVPVDVATYLLNEKRQSVNHIEKRHNVKIVIIPNHHMETPHFE
VLRIRDDEVPESASFELVQKPEQTESTVSITLTQDKAKFEEPALKGLQAPSAAPTPAPAP
KVEEKKAAQPSLLSRLATWFSGLFGSDEAQKQAEAEKEKERNAQNQRNQQRRGRNRRSGN
RQQRGRNQSAGKDKEASKENTSAATEDKSTESRDDAGNRNSRNRNDRRRRGRSNKNQQQP
KPEAVKNEQVDSPAEAEKPKEAKAVQDKPRRQRKPIEKSVRVSSTGDSVEAKEPTQPAQK
AVDASTDGADTQKPTQAKEKTAKQSGSDKSENKAISDKVLDPRMQAAAELVQNQTQSATP
AEQSEEKSVEKSVDESTEEKSPQADTQVTQQTETSTDETVQTPDTTKPEADPEVASDDKV
EASVEQASEAVSATEEQSNSSETPEEPPKPTETEDTVEEKPEPKAEEKKSRDRSRRSPRH
QRAAGQKRKQMKTEAVIPNRSLSGSSFSAMTKATAEERKEAFKALPVASSDNRPQFVKDS
RIASISQARSTSYAEMAKCD
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atgctaattaatgccacgcaattagaagagttgcgtgttgcgctggttgacggccagcgc
ctttacgatttagatattgaaagccctggtcacgaacagaaaaaagcaaacatatataaa
ggcaaaatcacacgcatagagccaagtctcgaagctgcctttgtcgattatggcgcagaa
cgtcacggcttcctccctcttaaagaaatagctaaaacctattttccgcaaggttatacc
ttccagggtcgccccaacatcaaagatgtggttaaagaaggccaggaagttattgttcaa
atagacaaagaagagcgaggccaaaaaggcgccgccttaactacctttgtttccctggct
ggcagctatttggtgctcatgccgaacaacccccgagccggtggtatatctcgccgtatt
gagggcgatgaacgttcagcactaaaagaagcgctatctgacctcaatgttccgaaagaa
atgggactgatcgtccgtaccgccggtgtaggcaagtcaaaagaagagctcgagtgggac
ttgaatgttctgcttaaccattgggaagccattagcaaagctgcagacgagcgccctgct
cctttccttattcatcaggaaagcaacgttattttccgtgccttacgcgattacctgcgc
cgagacatcggtgaagttctcatcgatagcccgaaagtttacgagcaagtccgtagtcat
atacagcttattcgtccggattttttacaacgcgtaaaacaatacgaaggcgatgttccg
cttttcagtcactaccagattgaaagccaaattgaatctgcattccagcgcgaagtccgc
cttccgtcaggtggttcaattgttatcgacccaaccgaagcactgacatccatcgatatt
aactcgtcacgtgcaactaaaggtggcgatatcgaagaaacggcattgcagaccaacctt
gaagcagccgaagaaatagcacgtcagttgcgtttacgcgacgttggcggcttagtggtt
atcgactttattgatatgacccctgcccgccatcaacgtgatgttgaaaatcgtttacgc
gatagcttatctcaggacagagcgcgtattcaggtagcccgcatttcgcgctttggcttg
atggaaatgtctcgtcagcgtttacgtccttcgctgggcgaatcagcaaacaatgtttgc
cctcgttgtaatggtcagggaaccatacgttcgagcgattctttagctctgtcgatcttg
cgcttgattgaagaagaagccattaaagacaacaccattcaggtgcatgctcaggttccg
gtcgatgtcgcaacttatttgctcaatgaaaagcgtcaatccgtaaatcatattgaaaag
cgtcataacgtgaaaatcgttattatcccgaatcaccatatggaaacacctcactttgaa
gtgttacgtattcgtgatgacgaagttccggaatcggccagttttgagttggtgcaaaaa
ccggagcaaactgaatctacggtttctattactttgactcaggataaagctaaatttgaa
gagcctgcattaaaaggccttcaggcaccgagtgcagctcctacgccagcaccggctcct
aaagttgaagagaaaaaagcagctcaaccatccttgttgagtcgtttagcgacttggttc
tctggcttatttggttcagatgaagcacagaaacaggctgaagctgagaaagaaaaagaa
cgcaatgctcagaaccagcggaatcagcaacgtcgtggccgtaatcgccgctcaggaaac
cgccagcagcgaggccgcaaccagtcagcgggtaaggacaaggaagccagtaaagaaaac
acctctgcagctacagaagataaatcaacggaatctcgcgatgacgcaggtaaccgtaat
agtcgcaaccgtaacgatcgcagacgtcgtggccgcagcaataaaaatcagcagcagcca
aaaccagaagcggttaagaacgagcaagttgatagcccggctgaagcagaaaagccaaaa
gaggctaaagctgttcaggataaacctcgtcgtcaacgtaagccgattgaaaaatccgtt
cgcgtttcatcgactggcgattcagtagaagctaaagaaccaacgcagccagctcaaaag
gctgttgatgcgtcgactgatggtgcagatactcagaagccaacccaggctaaagagaaa
actgcaaagcaatctggttctgacaagagcgagaataaagcaatttctgataaggtgctg
gatccgcgtatgcaggcagctgctgagttggtacaaaatcagactcaatctgcgactccg
gcagaacagagcgaagagaagagcgtagagaagagtgttgatgagagtaccgaagagaaa
tcgcctcaagcggacactcaagtaactcaacaaactgaaaccagtacagacgaaacagta
caaacgccggacacaactaaacctgaagctgatcctgaagtggcatctgatgacaaagta
gaagcatcagttgagcaagccagtgaagcagtgtcagctacagaagagcaaagtaatagc
tctgaaacgcctgaagagcctccaaagccaactgagacagaagacactgttgaagaaaag
ccagagcctaaggctgaagagaagaaaagcagagatcgctctcgccgctctcctcgtcat
caacgggctgcggggcaaaaacgcaagcaaatgaaaaccgaagcggttatacctaaccgt
tcattaagtggttcatcattttctgcaatgacaaaggcaacagctgaagaacgcaaagaa
gcatttaaggctctgcctgtagcttcatcagataatcgtcctcagtttgttaaagacagt
cgtatcgccagtatttctcaggcgcgttcgacttcttatgccgaaatggcaaaatgtgac
taa
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