Idiomarina loihiensis L2TR: IL1367
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Entry
IL1367 CDS
T00218
Symbol
hrpA
Name
(GenBank) Helicase, ATP-dependent
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ilo
Idiomarina loihiensis L2TR
Brite
KEGG Orthology (KO) [BR:
ilo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ilo03019
]
IL1367 (hrpA)
Enzymes [BR:
ilo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
IL1367 (hrpA)
Messenger RNA biogenesis [BR:
ilo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
IL1367 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
APHB_HrpA
HA2_C
DEAD
AAA_22
ABC_tran
WHD_HA2
ResIII
nSTAND3
AAA_19
AAA_11
SLFN-g3_helicase
Retrotran_gag_2
T2SSE
nSTAND_NTPase5
NACHT
FtsK_SpoIIIE
CpgS_C
Zeta_toxin
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AAV82207
UniProt:
Q5QZ54
LinkDB
All DBs
Position
complement(1468516..1472445)
Genome browser
AA seq
1309 aa
AA seq
DB search
MSRQKSHDKSQSQPFVDKFQTQLEQCTTQQAALLRGRLRGLSKIKNEQRQQQVLERIAAD
IETAELAYLERQQQKFHISYPEELPVAQQRGDIKTAIEQNQVVVIAGETGSGKTTQLPKM
LLELGYGRKGTIGHTQPRRLAARSVAARIGDELQDHAKKQVGYKIRFQDETAPTTAIKLM
TDGMLLSELQQDPLLLQYDAIIIDEAHERSLNIDFLLGVLHTLLPKRRDLKVVITSATIE
TERFSKHFHDAPVLTVTGRTYPVEVRYRPPKEDGKAADEDVLQGVCEAVEELQRESEGDI
LIFASGEREIRDYADAIGDLQLRNTEVLPLYARLSSHEQNRVFQSHSQRRVVIATNVAET
SLTVPGIRFVIDPGTVRMSRYSYRTKVQRLPIEPISQASANQRKGRCGRIGPGICIRLYS
EEDFLQRPEYTDPEILRTNLAAVILQMSSLRLGDIRQFPFVQKPDERFVKDGLNLLEELH
AIKPGRKNEQPKLTDTGRQLSRLPLDPRLARMVIAGQQYGCVREMLIITAALSIQDPRER
PHDAQQKADEWHQRFRDKSSDFMAFLNLWNYVKEQQKALSGNQFRKQMGREFIHFMRLRE
WQDIYTQSRQTVREMGLSINEEPATFEQVHRALITGLLSQVGFKEDRHEYQGTRQTRFHI
FPGSGLFGKPPKWVVTAELAETSKLYARINADIDPLWIEEAAPHLVKKQYLEPHFEKKQG
SVIADEQVTLLGLILVPRRRVQFGPVSPVKAREIFIREGLVNSQLTRKLPFIQHNLKLIE
DVQVLEAKSRRRDILVDEEVLFEAYDRAIPEGIYNEKLLAGWWHKAAKKEPKLLFFERDD
LIAGETEHITENEYPEFWRQDNLRLPLSYHFEPNAEDDGVSVNIQLGILNQVKPEGFDWH
IPALREERIAHLIKSLPKTLRRNFVPAPNFAGAIIADIEPLQGRLTDAMATKLRRMTGVT
VPEESWDESSLPDHLRMNFKILDGKKLVNQGRDLQSLQQQLSGKVQQRLEKTAGDDISRE
RVDSWDFDDLPEIITERQQGFELKAYPGLINKGKGQVALQLFDNPEQAKKHHKAGVRELL
LQQIPSPIKHLQKSLSNKAKLTMYFNPWGKVDALIADCIAAAVDGLIQEQIEQGNELREQ
KGFEQLKDIVRANLNDRVEQIALEVEQCLLLSQQVRKSLKGKIPLDQIQSRGDIQDQLDN
LVFAGFVSAFGGERLSDIVRYLKAIQRRLEKLPVDPNKDRLMTLTLTNLEEQYKAAVKAY
ENKGSVVPDDVAEIRWMIEELRVSFFAQTLGTKYPVSEKRVKQAIEAAK
NT seq
3930 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgtcaaaaatcgcacgataaatcacaaagtcagccttttgttgataaatttcag
acacaattagagcaatgtacaacacaacaggccgcgcttttgcgcggtcgtttgcgtggt
ctgagtaaaattaaaaacgagcaacgacagcagcaggtgctcgagcgcatagccgcagat
atcgagactgctgagttggcgtatctggagcgtcagcagcaaaagtttcatatcagttac
cccgaagagttgccggttgcccagcagcgtggtgacattaaaacagccattgagcagaat
caggtggtggtcattgccggcgagaccggttcgggtaaaaccacgcagttaccgaaaatg
ttgctggaactggggtatggtcgcaaaggtaccatcggtcatactcagccacgacgcctg
gcagctcgtagcgttgctgcccgtattggggatgagctgcaggatcacgcgaaaaagcag
gtgggttataaaatccgctttcaggatgagaccgcaccgactacggcaataaaactaatg
accgacggtatgctgttatccgaactgcagcaagaccctctgctactgcaatacgacgcc
attattattgatgaagcgcatgagcgcagtctgaacatcgacttcttgctgggtgttctg
catacgctgctgcccaaacgccgtgatcttaaagttgttattacctcagcgactattgaa
accgaacgtttctccaaacactttcacgatgcccctgtattgacggtaaccgggcgaacc
tatccggttgaagtccggtatcgtccgcctaaagaagatggcaaagctgctgatgaagac
gtattgcagggtgtttgtgaggcggtggaagagctgcaacgtgaaagtgaaggcgatatt
cttatttttgccagcggtgagcgcgaaatccgcgattacgctgacgctattggtgacttg
caactgcgcaataccgaagtgttacccttgtatgcgcgtttgtcgtcgcacgagcagaac
cgtgtatttcagtcgcacagtcagcgccgggtggttattgccaccaacgtagcagaaacc
tcattaaccgtgccgggcatacgctttgtaattgacccgggcacagtgcgcatgagccgt
tacagttaccgcactaaagtgcagcgcttacctattgagccaatttcacaggccagcgcc
aaccagcgtaaggggcgttgtggccgtattggtccgggtatttgtattcgcttatacagt
gaagaggactttttgcagcgtccggaatataccgacccggaaattctccgtaccaatttg
gcggcggtgatactgcaaatgtcgtcgttgcgtctgggtgatattcgtcagtttcctttc
gtacaaaagcccgacgaacgctttgttaaagacggtttgaacttattggaagagctgcat
gccattaaacccgggcgtaaaaatgaacaaccgaaattaacagatacaggacgacagctg
tcacggctgcctctggatccgcgactggccagaatggtcatagctggacagcaatatggt
tgtgtccgtgaaatgctgataattaccgcggctctgagtattcaggacccgcgtgaacgg
ccacacgatgcgcagcaaaaagccgatgaatggcaccagcgttttcgtgacaagagctct
gactttatggcgtttctcaatttatggaactacgtcaaagagcagcagaaggccttgtca
gggaatcagttccgtaagcaaatgggtcgtgagtttattcattttatgcgcttgcgtgag
tggcaggatatttacacgcagagccgacaaacggttcgggaaatggggttatccattaat
gaagaacctgccactttcgagcaagtacacagggctttaattactggcttattgtctcag
gtgggctttaaagaagaccgacacgaatatcagggaacacggcaaacgcgttttcatatt
ttcccgggctcaggtttgtttggtaaaccgcccaagtgggttgttactgctgaactggcg
gaaacttcaaaattgtatgcgcgtattaatgccgatattgacccgctgtggatagaagaa
gccgcgccacacttagtgaaaaaacaataccttgagcctcattttgagaagaagcaaggc
agtgttattgccgatgagcaggtcacgttactgggacttattctggtacccagaagacgt
gtccagtttggtccggtttcaccggttaaagcccgggagatattcattcgcgaagggctg
gttaattcacagctaacgcgcaagctgccttttattcaacacaacttaaagttgatagaa
gatgttcaggtgctggaggcgaagtcacggcggcgcgatattctggtggatgaagaggtg
ctgttcgaggcttatgaccgcgccatacccgaaggcatctataacgaaaagttgctggca
ggctggtggcataaggcggccaaaaaagagcctaaactgctgttttttgagcgtgacgac
cttatcgccggtgagaccgaacacattaccgaaaatgagtacccggagttttggcgacaa
gataacttgcgattgccgttaagttaccattttgagcctaacgctgaagacgacggtgtc
agtgtgaatattcagctgggtattctgaatcaggtgaagcccgaaggtttcgactggcat
attcctgcattacgcgaggagcgtattgctcacttaattaagtcgctgccaaaaacctta
cgccgtaattttgtaccggcgcctaacttcgctggcgcgattatagccgatattgagccg
ttgcaagggcgcttaaccgacgctatggcgactaagttacggcgtatgaccggcgtaacc
gttccggaagaaagctgggatgagtcttcgctgcctgatcatttacgtatgaactttaag
attcttgacggcaagaaactggtgaatcaggggcgcgatctgcaaagccttcaacagcaa
ttgtcgggtaaagtgcagcagcggctggagaaaaccgccggtgacgatattagtcgtgag
cgcgtcgatagctgggacttcgatgatttacctgaaatcatcaccgaacgtcagcaaggt
tttgagctgaaggcgtatccgggcttaattaataaaggcaaaggacaggttgcgctgcag
ttattcgataacccggagcaggctaagaagcatcataaagccggtgtacgggaattgtta
ttgcagcaaataccgtcacctattaagcatttacagaagtcactgtcgaataaagccaag
ttgactatgtactttaacccctggggtaaagtggatgcgttaatagccgactgtatagca
gcggcggtagacggcctcattcaggaacagattgagcagggcaatgagctccgtgaacaa
aagggctttgagcaattaaaagatattgttcgtgctaatttgaatgatcgtgttgaacaa
atagcactggaagttgaacagtgcctgctattgtcacaacaggttagaaagtctcttaaa
ggtaaaattccactggatcaaatccagtcccggggcgatattcaggaccaactggataac
ttagtgttcgccggatttgtctctgcttttggtggggagcgtttgagtgacattgtgcgt
tatttaaaagctattcaacgtcggctagaaaaactgccggttgacccgaataaagacagg
ttaatgacactgactctgacaaatctggaagagcagtataaagcagcggtgaaagcgtat
gaaaataaaggctcggtggttccggatgacgttgctgaaattcgctggatgattgaggag
ctgcgagtgtcattcttcgcgcagacgctgggaacgaagtatccggtgtcagaaaagcgg
gttaaacaagcaatagaggcggctaaatag
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integrated database retrieval system
