Idiomarina loihiensis L2TR: IL1370
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Entry
IL1370 CDS
T00218
Symbol
sbcB
Name
(GenBank) Exonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
ilo
Idiomarina loihiensis L2TR
Pathway
ilo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ilo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
IL1370 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ilo03400
]
IL1370 (sbcB)
Enzymes [BR:
ilo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
IL1370 (sbcB)
DNA repair and recombination proteins [BR:
ilo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
IL1370 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
IL1370 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
IL1370 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_C
ExoI_SH3
RNase_T
Motif
Other DBs
NCBI-ProteinID:
AAV82210
UniProt:
Q5QZ62
LinkDB
All DBs
Position
1473883..1475322
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AA seq
479 aa
AA seq
DB search
MAQNEQETFYWHDYETWGANPLVDRPAQFAGLRTDTDFNVIGRPLTLYAQPTPDFLPNPE
ATLITGITPQLAAKQGVGEAEFSKAIANEFQKPNTTIIGYNNIRFDDEVTRLLFYRNFYD
PYEYSWQNGNSRWDLIDVVRACFALRPDGINWPENSDGQPSLKLEHLSVANNIEHGQAHD
AMSDVYATIGLAKLISEKQPKLWQWAYSIRRKQKLLNLFNWQAPEPLAHVSGFYGTANRY
LSAILPLGFHPKQNSNVVAWDLRVPPMDFADKSVEELTELTYTSRRELEEQGLQKSGIQN
IHLGRCPFLAPIKTISAEAADSAALDTAALETNAKWLQENSDFRDKLMQVFEQTKEFAPR
TDVDHQIYDGFFSPQDKKHMEIIRSSEPHQLAGLELDFQDKRMPALLFRYRARNYPSTLS
DKELNKWRLFCQQRLIEPPEGLLSAEGFALKLEDLANQHQEDAHKLRLLKSLYDYAASL
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atggcacaaaacgaacaagaaaccttttactggcacgattatgagacatggggcgctaac
cctttagtggatcgccctgcacagtttgccggcttacgcacagacactgattttaatgtt
atcggtcggccgttaacgctatacgctcagcccacaccagactttctgccgaatccggaa
gccactttaattactggtattacgccgcagcttgctgcgaaacaaggtgtcggtgaagcg
gaattcagcaaagccatagcaaatgagtttcaaaagcccaataccaccattattggctac
aacaacattcgttttgatgacgaagtcacccgtttgctgttctatcgcaacttttatgac
ccttacgaatacagctggcaaaacggcaattcacgctgggacttaattgatgtcgtgcga
gcctgttttgcgctgcgccctgacggtattaactggccggagaactctgacggacaaccc
agtctaaaactggagcatttgagtgttgccaataacattgagcatggtcaggcgcacgat
gctatgtcggacgtttatgcgaccattggtctggcaaagctcattagcgaaaaacagccg
aaattgtggcagtgggcttacagtattcgccgtaaacaaaagctactgaacctgtttaac
tggcaggcaccggagcctctggcacatgtcagtggtttttacggtacggctaaccgctat
ttgtcggctatattgccgctgggttttcaccctaagcaaaatagcaacgttgttgcctgg
gacctgcgcgttccgcccatggattttgccgataaatcggtagaagaattaacggagcta
acctacacgagtcgtagggaactggaagagcaaggcttacaaaagagcggcatacaaaat
attcacctcggtcgctgtcctttcttagcgcctattaaaactatttctgctgaagctgct
gatagtgccgcgttagatacagccgccctggagacaaacgctaaatggttacaggaaaac
agcgactttcgcgacaaactcatgcaggtgtttgagcagaccaaagaatttgcccccaga
accgacgttgatcaccagatatacgacggctttttctctcctcaggataaaaagcatatg
gagattatccgttcgtcagagccacaccaactggccggtctggaactggattttcaggac
aagcgtatgcctgcactgctgtttcgttaccgggcgcgaaactacccgtcaactcttagc
gataaagaactaaataagtggcgcctgttttgtcagcaacgtttaattgagccgccagaa
ggcttattgtccgccgagggcttcgcattgaagctggaggatttagcaaatcagcatcag
gaagatgcgcataagctgcggttgctgaaatcactgtatgactacgccgcatctctctga
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