Idiomarina loihiensis L2TR: IL1546
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Entry
IL1546 CDS
T00218
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ilo
Idiomarina loihiensis L2TR
Pathway
ilo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ilo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IL1546 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ilo03019
]
IL1546 (rhlE)
Enzymes [BR:
ilo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IL1546 (rhlE)
Messenger RNA biogenesis [BR:
ilo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IL1546 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
P-loop_SecA
UvrD-helicase
HI1480
Gag_p24
Motif
Other DBs
NCBI-ProteinID:
AAV82384
UniProt:
Q5QU68
LinkDB
All DBs
Position
1664644..1665894
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AA seq
416 aa
AA seq
DB search
MSTEQNPSSFQSLGLSDDILRAVTECGYTTPTPIQQQAIPTVMAGHDLLAAAQTGTGKTA
GFTLPLLHKLSQTKTDGKPVIKALILTPTRELAAQVEDNLNTYAKYTGLKSLVIFGGVGI
NPQISALRRGVDILVATPGRLLDHSRQGTVDLSKIDVLILDEADRMLDMGFIHDIKKVMK
LIPEKRQTLLFSATFSSEIKALSQQFMQQPKLIEVARQNAAADTIEQRVYPVDKKRKREL
LSYLIGSRNWRQVLVFTRTKHGANRLATQLTDDGLPAMAIHGNKSQGARTKALAQFKAGK
LRVLVATDIAARGIDIDELPHVINFELPQVAEDYVHRIGRTGRAGSEGEAASLVCVDEHK
LLRDIEKLTKNEIPREVIPGFEPDPSIKPEPIQKPRTGRPQNSRRAPRQKRPDTRR
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgtccacagaacaaaacccatcctcattccagtcactcggattgagcgacgatatttta
cgagccgttactgaatgcggttacaccaccccaacaccaattcaacagcaagccattccg
accgttatggccggccacgacttattagccgccgcgcaaacgggtaccggtaagacagct
ggttttacgctacctttgctgcacaaattgtcgcagacaaagaccgacggaaagcctgtt
attaaggcgttaatccttacgccaaccagagagctggcagcacaggttgaagacaatttg
aatacctatgcaaaatataccggtctcaagtctctggtgatttttggtggtgttggtatt
aacccacaaattagtgccttgcgtcgtggtgttgacattcttgttgcaacacccggccgt
ttgctggatcacagtcgtcagggaaccgttgatttaagtaaaattgacgtactgattctg
gacgaagctgaccgcatgctggatatgggatttattcatgacattaaaaaggtcatgaag
ctcattcctgaaaaacgccagacactgctgttttcagcgactttttctagtgaaattaaa
gcactgtctcagcagtttatgcagcaacccaagctgattgaagttgcgcgtcagaatgcc
gcagctgataccattgagcaacgtgtttatccggtggataaaaaacgtaaaagagagcta
ctcagttacttaattggcagccgtaactggcgacaagtgctggtctttacgcgtaccaag
catggtgctaacagactggcaacacagttaactgatgatggcctccccgctatggcaatc
cacggtaacaaaagtcagggcgcaagaaccaaggctttagcacagtttaaagccggtaaa
ttacgagtattggttgcaacggatatcgctgcacgcggtattgatattgatgaattgcca
cacgttattaactttgaactgcctcaggtcgctgaagactatgtacaccgtattggccgt
acaggccgtgcaggaagtgaaggtgaagccgcgtctttagtctgtgttgatgagcataaa
ttgctgcgcgatatagaaaagctaactaaaaatgagatacccagggaagttattccgggt
tttgaaccagaccccagcataaagccggagccgattcagaagcctcgtacggggcgtcct
caaaactctcgtcgtgcgcctcgccagaagcgcccggacacacgacgttaa
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