Idiomarina loihiensis L2TR: IL1891
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Entry
IL1891 CDS
T00218
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
ilo
Idiomarina loihiensis L2TR
Pathway
ilo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ilo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IL1891 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ilo03021
]
IL1891 (rpoA)
03400 DNA repair and recombination proteins [BR:
ilo03400
]
IL1891 (rpoA)
Enzymes [BR:
ilo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IL1891 (rpoA)
Transcription machinery [BR:
ilo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IL1891 (rpoA)
DNA repair and recombination proteins [BR:
ilo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IL1891 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
AAV82723
UniProt:
Q5QXV8
LinkDB
All DBs
Position
complement(2030875..2031864)
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AA seq
329 aa
AA seq
DB search
MQGSVTEFLKPRLVDIEQISPTHAKVTLEPLERGFGYTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSSKEGVQEDVIEVLLNLKGLAVSVEGKDEATLTLNKSGAGPVTAGDFTHDGD
VEIVNPEHVICHLTGDYELVMRVKVERGRGYVPAASRQSADDDERPIGRLLVDASFSPVE
RIAYSVDAARVEQRTDLDKLVIEMETNGTLDPEEAIRRAATILAEQLDAFVELRDISEPE
EKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIQYIGDLVQRTEVELLKTPNLGKKSLT
EIKDVLASRGLSLGMRLENWPPASLIDND
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgcagggttctgttaccgaattcctaaagccgaggttagtcgacatcgagcaaatcagc
ccgactcatgccaaggtgacactggagcctctggaacgcggctttggttatacactaggt
aatgcgttacgtcgcattttactgtcgtcaatgccaggctgtgcagtgactgaggttgaa
atcgatggcgtgctgcacgaatacagcagcaaagagggcgttcaggaagatgtcattgaa
gttttattaaacctgaaagggctggcagtcagcgttgaaggtaaagatgaagcaactctg
actttgaataaatccggagcaggtcctgtaacagcaggcgatttcacccacgatggtgat
gttgaaatcgttaatcctgagcacgttatctgtcatctgacaggcgactatgaacttgtt
atgcgagtgaaagtcgaacgtggtcgtggttacgtgcctgcggcatctcgtcagtccgct
gatgatgatgaacgtccaatcggtcgtcttttagtcgacgcgtcgttcagcccggtagaa
cgcattgcatattctgtagatgcggctcgtgttgaacagcgcactgacttagacaagctg
gttatcgaaatggaaaccaatggtacattggatccagaagaagctatccgccgtgcagca
acaattttagctgaacagttggatgccttcgtagaacttcgtgatatcagtgaaccggaa
gaaaaagaagagaagccggagttcgatccgatccttctgcgtccggtagacgacttggaa
ttgactgttcgatctgcgaactgcttgaaagcagaagcgattcagtacattggtgactta
gtacaacgcactgaggtcgagttattgaaaactccgaacttgggtaagaagtcgttgact
gaaatcaaagacgtgttggcttcacgtggtttgtctctaggcatgcgccttgagaactgg
ccaccagccagcttaattgacaacgactaa
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