Idiomarina loihiensis L2TR: IL2200
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Entry
IL2200 CDS
T00218
Symbol
rpoD
Name
(GenBank) DNA-directed RNA polymerase sigma 70 subunit
KO
K03086
RNA polymerase primary sigma factor
Organism
ilo
Idiomarina loihiensis L2TR
Pathway
ilo02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ilo00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
IL2200 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ilo03021
]
IL2200 (rpoD)
Transcription machinery [BR:
ilo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
IL2200 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMEM120A-B
Motif
Other DBs
NCBI-ProteinID:
AAV83032
UniProt:
Q5QVK5
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Position
complement(2349877..2351706)
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AA seq
609 aa
AA seq
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MQQNRQSQLKVLIAKGKEQGFLTFAEVNDHLPQEIVDSDQVEDIIRMINDMGIRVFESAP
DADDLMMAESAADEDAAEEAAQALASVDGEIGRTTDPVRMYMREMGTVELLTREGEIDIA
KRIEEGINQVQCSVAEYPEAINFLLEQWDSYEAEELRLTDIISGFIDPDEVDEAPVAATN
VGSELPSEELEKSDDDDDEDEEEADTGIDPEFARSKFNALREQYEATRQAIAKHGRDGAG
ARVEIDKLSDLFKQFRLVPKQFDRLVKDMRAMMQRVRVQERIIMKISVEQGEMPKRNFMK
AFATHENNMAWVDKEIDSGASYSDTLKEVRGEIERCVNKLVDVERETGLTIGKVKEINRR
MSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRG
YKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELA
ERMMMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDNTLDLPIDSATSESLRNSV
RDVLGGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRS
EQLKSFLDE
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgcagcagaatcggcaatcgcaacttaaggtccttattgcgaaaggcaaagaacaaggg
tttttgacatttgctgaggtcaatgaccatttacctcaggaaattgttgattccgatcag
gttgaagacattattcgcatgatcaacgacatgggtattcgcgtgtttgaaagcgcaccc
gatgccgatgatctgatgatggcagaaagtgctgcagatgaagacgctgccgaagaagcc
gcgcaagcattagcctctgtcgatggcgaaattggtcgcacaactgacccagtgcgcatg
tacatgcgtgaaatgggtaccgttgagctactgactcgtgaaggcgaaattgatattgcc
aagcgtattgaagaaggcattaaccaggttcagtgctctgttgctgagtacccggaagcc
attaacttcttgcttgagcagtgggactcctacgaagccgaagagctgcgcttaaccgac
attatttccggattcatcgacccagacgaagtagacgaagcgcctgtagctgctactaac
gttggttctgaacttccaagcgaagagctggaaaaatcagacgacgatgatgacgaagac
gaggaagaagcggataccggtattgatccggaattcgcacgcagcaaatttaatgcactg
cgcgaacaatacgaagctacacgtcaggccattgctaagcatggtcgtgatggtgcaggt
gctcgtgttgaaatcgacaagttaagcgacttattcaaacagttccgtttggttcctaag
caatttgaccgtttggttaaagacatgcgtgccatgatgcagcgtgtccgtgtgcaggaa
cgtattattatgaagataagcgttgaacagggcgaaatgcctaaacgcaacttcatgaaa
gcttttgccacccatgaaaacaacatggcctgggttgataaagaaattgactctggtgca
agctactccgacacattgaaagaagttcgcggcgaaattgaacgctgcgtaaacaagctg
gttgacgtagaacgcgaaactggcttaaccattggtaaagttaaagaaattaaccgtcgc
atgtccattggcgaagccaaagcgcgtcgtgcgaaaaaagaaatggttgaagctaacctg
cgtttggttatctctattgctaaaaaatacaccaaccgtggtttacagttcctggactta
attcaggaaggtaacattggtttgatgaaagccgtggacaaattcgaataccgccgtggt
tataagttctcaacttatgcgacttggtggatccgtcaggcaattacccgttcaattgcg
gaccaggcacgtactattcgtatcccggttcatatgattgaaaccatcaataagctgaac
cgtatttctcgccaaatgttgcaggaaatgggtcgcgagccactgccggaagaactggca
gagcgcatgatgatgccggaagacaaaattcgcaaagtactgaaaatagcgaaagaacct
atttcaatggaaaccccaattggcgacgatgaagattcgcatctgggtgactttattgaa
gacaacacgctggacttgccaattgactcggcaacatcagaaagcctgcgtaactcggtt
cgcgatgtactgggtggtttaacggcacgtgaagcgaaagtattgcgtatgcgctttggt
attgatatgaataccgaccatactttagaagaagtgggcaagcagtttgatgtgacgcgt
gaacgaatccgtcaaattgaagccaaagcattaagaaagcttcgccatccaagccgctca
gagcagcttaaatcgttcttggatgagtaa
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