Ignatzschineria larvae: WMO13_08135
Help
Entry
WMO13_08135 CDS
T10445
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ilv Ignatzschineria larvae
Pathway
ilv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ilv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
WMO13_08135 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ilv03021
]
WMO13_08135 (rpoC)
03400 DNA repair and recombination proteins [BR:
ilv03400
]
WMO13_08135 (rpoC)
Enzymes [BR:
ilv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
WMO13_08135 (rpoC)
Transcription machinery [BR:
ilv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
WMO13_08135 (rpoC)
DNA repair and recombination proteins [BR:
ilv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
WMO13_08135 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
WZW87330
UniProt:
A0ABZ3BXT5
LinkDB
All DBs
Position
complement(1967258..1971367)
Genome browser
AA seq
1369 aa
AA seq
DB search
MNLLNLFKNEDKGGFDAIKIGLASPEKILSWSYGEVKKPETINYRTFKPERDGLFCAKIF
GPVKDYECLCGKYKRLKHRGVVCEKCGVEVTLSNVRRERMGHISLASPVAHIWYLKSLPS
RIGLLLDMTLRDIEKILYFESFVVIEPGLTPFEHGQVLTDEEFLDAIEEYGDEFDARMGA
EAILELLKAIDLEEEASKLREELQETRSETKFKRLSNRLKLVESFIASGNKPEWMILTNL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLQRLLELEAPDIIVRNEKRMLQES
VDSLLDNGRRGRAISGANKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPTLR
LHQCGLPKQMALELFKPFIFSQLIQRGIATTIKAAKRMVEREVPEVWDILEHVITEHPIL
LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSIESQLEARA
LMMSSNNILSPANGEPIIVPSQDVVLGLYYMTRERLNAKGEGRVFADTAEVHRAYALKEL
DVHAKISVRLPIVMFEDAKEGETYRRVDSTVGRVILTDLLPVGLPFSVIDKVLTKREISN
LINTCYRRLGLKDTVIFADKLMYTGFYYAMRSGSSVGYEDMVIPPQKQAIIERAEAEVKE
VQHQYSQGLVTNGERYNKVIDIWSRTNEEVAKTMMSNLGKDEVIDAKTGKKVEQTSFNSI
FMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLDVLQYFVSTHGARKG
LADTALKTANSGYLTRRLVDVAQDLVIVNEDCGTRDGLLMTPIVEGGDIVEPLRARVLGL
VVAEDVYVPGSDEVLFEAGTLLDEAAVDLLDEKGVDELLARSPITCKNRHGLCAKCYGRD
LGRGHLVNPGESVGVIAAQSIGEPGTQLTMRTFHIGGAASGSAAVSNVQVKTKGTLKLVR
VKTVRNKDNNLVSTSRSGELIIMDEFGRNRERYKVPYGAVIVVDEGGSVDVGDIVATWDP
HTIPVIVEVTGYVKFVDFEENINIQKQTDDVTGLSNLIVLDSKQRNAGGKRPSIYVVDEA
GNELNIPGTDVTAMYTLPVGAILNLNDGDQVTVGDPLARIPQESSKTRDITGGLPRVADL
FEARRPKEAAILAEQSGIVSFGRETMSKQRLIITDSAGNAHEELIPKWRHVNVFEGESVE
KGEIIVDGELSAHDILRLLGVKELAAYLVKEIQDVYRLQGVKISDKHIEVIIRQMLRKVE
ILESNDSTFIKGEQAEYVAVLEENERLEAEGKIPATYRPVLLGITKASLATDSFISAASF
QETTRVLTDASIKGLKDHLRGLKENVIVGRLIPAGTGLIYHEERRNAAK
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atgaacttattaaatttatttaagaatgaagataaaggtggttttgacgcaattaagatt
ggtcttgcctcccctgagaagattcttagctggtcttatggtgaagttaaaaagccagag
acgatcaattatcgtacctttaaaccagagcgtgatggacttttttgtgccaaaattttc
ggacctgtgaaagattatgagtgcttatgtggtaaatataagcgcctaaaacaccgcggt
gttgtatgtgaaaagtgtggcgttgaagtcacgctttcaaatgttcgtcgtgagcgtatg
gggcatattagtctagcttcccctgttgcgcatatttggtatctcaaatcactaccaagt
cgtatcggtcttttgttggatatgacacttcgtgatatcgagaagatcctctactttgaa
tcatttgtagtgattgaaccaggcttaacaccgtttgaacatggtcaagtattaaccgat
gaagaattcctcgatgcaattgaagagtacggtgatgagtttgatgcacgtatgggagct
gaagcaattcttgagctcttaaaggcgattgatcttgaagaagaagcatcaaaattacga
gaagaattacaagaaacccgttcagagactaaatttaagcgtctttctaaccgccttaaa
ttagtagaatcatttatcgcatcaggcaataaacctgagtggatgatcttaacaaattta
cctgtattaccaccagatttacgtccattagtaccacttgacggtggccgttttgcgacg
tcagatttgaatgatctttatcgtcgtgttattaaccgtaataaccgtctacaacgtctt
cttgaattagaagcgccggatattattgtacgtaatgagaagcgtatgcttcaagaatct
gtggactccttactagataatggtcgtcgtggtcgtgcgatttcaggggctaataagcgt
ccattgaaatcacttgcggatatgatcaaagggaagcaaggtcgtttccgtcaaaacctt
cttggtaagcgtgtggactattccggtcgttctgtaatcgtggtgggaccgacacttcgt
ctacatcagtgtggtctacccaaacagatggcgcttgagctctttaaaccatttatcttc
tcacaattaattcaacgtggtattgcaacaacgattaaagctgcaaaacgaatggttgag
cgtgaagtgccggaagtatgggatatcttagagcatgttattactgagcacccaatttta
cttaaccgtgcgccaaccttgcatagattagggattcaggcatttgaacctgtactcatc
gaaggtaaagcgattcagttgcatccgctcgtttgtaccgcattcaacgccgacttcgat
ggtgaccagatggcggttcacgtaccattatcaatcgagtcacagcttgaagcgcgtgca
ttaatgatgtcttcgaacaacattttgtcacctgctaatggtgagccaatcatcgtacct
tctcaggacgttgtattaggtctttactatatgacccgtgagcgtttaaatgcgaaaggt
gaaggtcgtgtttttgcagatactgctgaagttcatagagcatatgcccttaaagaactt
gacgtgcatgcaaaaatctctgtccgtcttccaatcgtgatgtttgaagatgcgaaagag
ggtgaaacttatcgtcgtgtagattcaactgttggacgtgtgattttgacggatcttcta
cctgtaggcttacccttctccgtaattgataaagtattaaccaagcgtgagatctctaac
ctgattaatacctgttatcgtcgtttaggtcttaaagatacggtaatctttgccgataaa
ttgatgtataccggcttctattatgcgatgcgttcaggctcttcagtgggttatgaagat
atggtgatcccaccacaaaaacaagcgattattgagcgtgcagaagcagaagttaaagaa
gttcagcatcaatattcacaaggtttggtcacgaacggtgagcgttacaataaggtcatc
gatatttggtctcgtaccaatgaagaagttgcaaaaacaatgatgagcaacctcggtaaa
gatgaagtcatcgatgcgaaaacaggtaaaaaagttgagcagacttcatttaactcgatc
tttatgatggccgattcaggggcgcggggtagtgcggctcagattcgtcagcttgcaggg
atgcgtggtctgatggcgaaaccagatggttcaatcatcgaaacaccgattactgcaaac
ttccgtgaaggtcttgacgttcttcagtacttcgtatcaacccatggtgctcgtaaaggt
cttgcggatacggcacttaaaacagcaaactcaggttacttaacgcgtcgtcttgttgac
gttgcgcaggatcttgtgattgtgaatgaagattgcggtacacgcgatggtctcttaatg
acacctatcgttgaaggtggggatatcgttgagccattacgcgctcgtgtgttagggctt
gtagttgctgaagatgtctatgttccaggttcggatgaagtcttatttgaagccggtact
ttattagatgaagctgcagttgatcttcttgatgagaagggtgtggatgagttattagcc
cgttcaccaattacttgtaagaatcgtcatggcctttgtgcaaaatgttatggtcgcgat
cttggtcgtggtcatcttgtcaatccaggcgagtccgtgggcgttattgcagcacaatcg
attggggaaccaggaacacagttaacgatgcgtaccttccatatcgggggggcggcatca
ggttcggcagctgtttcaaatgtacaggttaaaacaaaaggtacattgaagcttgttcgt
gtgaaaacagttcgtaacaaagataacaatttagtatctacctctcgttcgggcgaattg
atcatcatggatgaatttggtcgtaaccgtgaacgttataaagtaccttacggtgcggtg
atcgttgtggatgagggcggtagtgtagatgtaggcgatatcgttgcaacatgggatcca
catactatccctgttatcgttgaagtaaccggttatgtgaagtttgtggattttgaagag
aatatcaatattcagaaacaaacagatgatgttacaggtctttctaacttgatcgtactt
gattctaaacaacggaatgctggcggtaaacgtccttcgatctatgttgttgatgaagcc
ggtaatgagcttaatattccgggtacagatgtgactgcaatgtacacattaccagtcggg
gcgatcttgaacttgaacgatggggatcaagtaactgtaggtgaccctcttgcacgtatt
ccacaagaatcatctaaaacacgtgatattaccgggggtcttccacgggttgcggactta
tttgaagcgcgtcgtcctaaagaagcggcaattcttgcagagcagagcggtatcgtgagc
tttggacgagaaacgatgagtaagcaacgcttgatcattacggattcagcgggcaatgcg
catgaagagttgattccaaaatggcgtcatgtcaacgtattcgaaggtgaatcagttgag
aaaggtgaaatcattgtggatggtgagttaagtgcgcatgatattcttcgtcttttaggc
gtgaaagaacttgcggcttatcttgtgaaagagatccaagatgtttaccgtctacaaggg
gtaaaaatctctgataaacatatcgaagtgatcattcgtcagatgcttcgtaaggttgag
attcttgaatcaaatgacagtaccttcatcaaaggtgagcaagctgaatatgttgcagta
cttgaagagaatgagcgtttagaagcagagggtaagattcctgcgacatatcgccctgtt
cttcttggtattactaaagcatcattagcgacagatagcttcatctcggcggcatcgttc
caagagacaactcgtgtcttgacagatgcttcgattaaaggcttgaaagatcaccttcgt
ggcttgaaagagaatgttattgtgggacgcttaattcctgcaggtacgggcttgatctat
catgaagagcgtcgtaatgctgctaagtag
DBGET
integrated database retrieval system
