Ignatzschineria larvae: WMO13_09265
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Entry
WMO13_09265 CDS
T10445
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ilv Ignatzschineria larvae
Pathway
ilv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ilv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WMO13_09265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ilv03019
]
WMO13_09265
03009 Ribosome biogenesis [BR:
ilv03009
]
WMO13_09265
Enzymes [BR:
ilv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
WMO13_09265
Messenger RNA biogenesis [BR:
ilv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
WMO13_09265
Ribosome biogenesis [BR:
ilv03009
]
Prokaryotic type
rRNA processing factors
WMO13_09265
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
WZW87547
UniProt:
A0ABZ3BZM4
LinkDB
All DBs
Position
complement(2237150..2240767)
Genome browser
AA seq
1205 aa
AA seq
DB search
MKRMLINATQQEEMRVALVDGQHLYDLDIENVATKQKKANIYKGKITRIEPSLEACFVDY
GSERHGFLPFKEIAREYYKNPGDHSLSVKDQLEEGTELIVQVEREERGNKGAALTTYVSL
AGRYLVLMPNNPKAGGVSRRISGKQRAEIRDAMSALAIPEEMGIIVRTAGMGRTAEELQW
DLDYLIMLWEAILDAGKKPAPLLIFQESNIIIRALRDYYRSDIGEILIDDEEVFKEAEIF
INNIMPQIGDKIKLYEDQVPLFTRFQVESQIQTAYERNVRLPSGGALVFDHTEALVSIDI
NSGRSTKGADIEDTALNTNLEAAEEIARQLKLRDLGGLVVIDFIDMLESKNQRKVESALH
DALASDRARIQVGQISRFGLLEMSRQRLRPSLDETSHIVCPRCEGQGTIRDTKSLALGIL
RLIEEESLKEKTSELVIQVPVNVAVYLLNEKRADVEDIEARLNVRVIIIPDTHLDTPHFK
ITRYRVSDEIVGEDSETHLIKEEVTLEDMRSEAVIQSKKVMEKPVVSGISPIAPPPKVVI
AEKKADILAKSQTLLNSILSYIKGFFAKDEAQTESKENNKKPRDNKNQRNNKNGNRARGN
NSNRQRNQRHNHPSRNTIETIEREVDLGAEFNQNANAEESTRESNNQGQKGNRRNGQNDR
SNDRNNERSDRNNDRRRNEQNGSGNDQSRRQSKQENDNQVNRQQDQKSQVRNNEGKGRND
RNEARDNDRKSRNQAVTPDHDTKENTAKDNDAKKRDSVENNAQEKGAKQESRSSSQNRSR
RSNKQSRPEKRDPDSVINEKGEEVIQVTVGDKVEERVIRQGRPRIAKEQVKEIVSEPVSN
EKKAVESIRPVISDDAMDIITKPEKTIAATVAVIALENDSVQKMTISKGRNRRAIKMIEA
DALESTDAIEASSETHSAENSMTTPVAANVDTVIVESTTSVANQEAVSVATEAKQDVSMP
SVESSVMESDSFSSALEVTELADNKAEAVITTDVQDTAAVVVTSTSVESTHTADTNHSEE
VTVPADTLETNNVAEKVVESDVVQNVAMEPKEAEVINSSDSLTTEITAKAAEVSEDSVVQ
EAIATAAVVVENAQDSANQEKSNDTDTSKAVETIKEEVAKEEKTTEETKEEVQDKRPSNN
RGRKGGRTIKPGKPTRSKAKNRTKVIVSDDVLPNKKGNSEPKAAVEAGKSESTSQASTDS
DKTSS
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggatgctaattaacgcgactcaacaagaagagatgcgcgtagccctagtggat
gggcaacacttatatgatttagatattgaaaatgtggcaacaaaacagaaaaaagccaat
atctataaagggaaaattacacgaattgaaccttcgcttgaagcatgtttcgtagattat
ggttcagagcgccatggattcttgccttttaaagagatcgcaagagagtactacaaaaat
ccaggcgatcattcattgtcagtgaaggatcaacttgaagagggcacagaacttattgtg
caagtagagcgagaagagcggggtaataaaggcgcggctttaacaacgtatgtctctctt
gcgggtcgttatcttgttttaatgccgaacaaccctaaagcgggaggagtctctcgtcgc
atttctggtaaacagcgtgcagagattcgtgatgcgatgtcggcgcttgcaattcctgaa
gagatggggattatcgttcgtactgcgggaatggggcggacagcagaagaattacagtgg
gatttagactatctcattatgctttgggaagcgattttagatgccggtaaaaagcctgca
ccactccttattttccaagagagtaatattattattcgcgcacttcgggattattatcgt
agcgatattggtgagattttgatcgatgatgaagaggtcttcaaagaagcagagatcttt
atcaataatattatgccgcaaattggcgataagattaaactctatgaagatcaagtacca
ctctttacccgtttccaagtagagtcacaaattcaaactgcttatgagcgaaatgtccgt
cttccttctgggggtgctctcgtttttgaccatacagaagcattagtatcgatcgatatt
aactcggggcgttcaacaaaaggagctgatattgaagatacagcacttaatacgaacctt
gaggcagcagaagagatcgcgcgtcagttaaagttacgagaccttggcggtttagtggtg
atcgactttatcgatatgcttgagagtaagaatcaacggaaagtagagagtgcacttcac
gatgcgcttgcttcagatcgtgcgcgtattcaagtaggacagatttctcgttttggtcta
cttgagatgtcacgtcaacgtcttcgcccttcgttagatgaaacatctcatattgtctgc
cctcgttgtgagggacaaggtacgattcgggatacgaaatcattagcacttggtattttg
cgtttgatcgaggaggaatcccttaaagagaaaacctctgagcttgtcattcaggttccg
gtcaacgttgcagtttatctcttaaatgaaaaacgagcagatgttgaagacattgaagcg
cgtttaaatgttcgcgttattattattccggatacgcatttagacacacctcatttcaaa
ataacacgctatcgtgtgagtgacgaaattgttggggaagatagtgaaacgcatcttatt
aaggaagaagtgaccttagaagatatgcgtagtgaggctgtcatacagagtaaaaaagtg
atggagaagccggttgtttctggtatctcacccattgcaccaccgccaaaagtagtaata
gcagagaaaaaagcagacattttggctaaatctcaaacgcttttgaacagtattctaagc
tatattaaaggtttcttcgcgaaggatgaggcgcaaacagagagtaaagagaataataaa
aaaccgcgagataacaaaaatcagcgtaacaataaaaatggtaatcgtgcacggggtaat
aatagtaatcgtcaacgtaatcagcgccataatcatccaagtcgcaatacgattgaaacg
attgaacgcgaggttgatttaggggctgagtttaatcagaatgcgaatgctgaagagtca
actcgtgaaagcaataatcaggggcagaaaggtaatcgccgtaatgggcagaatgaccga
agtaatgatcgcaataacgaacgtagtgatcgtaataatgaccgtagacgtaatgagcaa
aatggctcagggaatgatcagtctcgccggcaatcgaagcaagagaatgataaccaagtg
aatcgtcagcaagatcaaaaatctcaagtgagaaataatgaggggaaaggccgtaatgat
cgaaatgaggcgagagataatgatcgcaaatctcgtaatcaagcggtaacgccggatcac
gatactaaagagaatacggctaaagataatgacgcgaaaaagagagattctgtcgagaat
aatgcgcaagaaaaaggtgcaaaacaggagagtcgttcctcatctcaaaatcgttcacgt
cgcagtaataagcagagtcgtcctgaaaaacgggatcctgatagcgtgattaatgagaaa
ggggaagaggttattcaggtgactgtcggcgataaagttgaagagcgggttattcgtcaa
ggccgtcctcgtattgcaaaagagcaggttaaagagatcgtgagtgagccggtatctaat
gagaagaaagccgtagaatcaatacgccctgtaatctcagatgatgcaatggatattatt
acaaaacctgagaaaaccattgcggcaacggtggcagtgattgcattagagaatgattct
gtgcagaaaatgacgattagcaaaggtcgtaatcgtagagcgataaagatgattgaggct
gatgctttagaatcgacagatgcgattgaagcgagttcagaaacccactcagcggagaat
tcaatgacgacccccgttgcggcaaatgtggatacagtaattgtagagagcacaacttct
gtcgctaatcaagaggctgtttctgtcgctactgaagcaaaacaggatgtatccatgcca
tcggtagagtcttctgttatggagtctgatagcttttcttcagcactagaagtcaccgag
ttggcagataataaagcagaggctgtcattacaactgatgttcaagatactgcagctgta
gtggttacatcgacttcagtggaatctactcatactgctgatacgaatcactcagaggaa
gtcactgtgccggcagatactttagaaaccaataacgttgcagagaaggttgtcgaatct
gacgtagtgcaaaatgttgctatggagcctaaagaagctgaagtgataaatagttcagac
tctctaacgactgaaatcactgcgaaggcagcagaagtatctgaagattcagttgtacaa
gaagctatcgcaacagcggctgtagttgtagagaatgcacaagatagtgcgaatcaggaa
aaaagcaacgacacagatacgtcaaaagctgtagaaacgataaaagaagaagtggcaaaa
gaggaaaaaacgacagaggaaactaaagaagaagtccaagataaacgtccttcgaataat
cgcgggcgcaaaggtggccggacaattaaaccgggaaaacctacgcgttcaaaagcgaaa
aatcggacgaaagtgattgtctctgatgatgtattgcctaataaaaaaggaaattcagag
cctaaagcggcagtagaagctggaaaatcagaatctaccagtcaggcttcgacagattca
gataagacttcttcataa
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