Iamia majanohamensis: PO878_09000
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Entry
PO878_09000 CDS
T08795
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ima
Iamia majanohamensis
Pathway
ima03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ima00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PO878_09000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ima03019
]
PO878_09000
03009 Ribosome biogenesis [BR:
ima03009
]
PO878_09000
Enzymes [BR:
ima01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PO878_09000
Messenger RNA biogenesis [BR:
ima03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PO878_09000
Ribosome biogenesis [BR:
ima03009
]
Prokaryotic type
rRNA processing factors
PO878_09000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
WCO68859
UniProt:
A0AAF0BXK6
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All DBs
Position
1885770..1887620
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AA seq
616 aa
AA seq
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MSDDDKAGRGTAAPTSDRAAERDTSTRSRPPDAPAGVTGGGGDAPKPKIGDTRPAPPGAD
TGSAGSPDDASGGSEGSGGSGSGRRRRRGSRGGRGRRSGGGQGGGDQTSSGGDGGRSRDG
GSGKAKAKGRGQGQGQGGGGRGRGGQGGGRGKGRGEAPAPVTAVTHAAPLELDDDVLEQR
RGRERKGKAVGRYMMAVHVQPEATQIAILEGRSLIEHQVSRPADDVSQIHGNVYLGKVQN
VLPGMEAAFVDIGTPKNAVLYRSDARFDPDDVDKAPKGQPKIEQMLKAKQTILCQVTKNP
IAHKGARLTQEVSLPGRFVVLVPNSTTYGISKRLPDDERKRLRGILDRVRPEGHGLIVRT
AAEGVTAEEIERDVELLADRWTQIEALAAQSQGQGATLLYREPDMAVRVIREELTKDFRK
VIIDDRALYEEVRDYVRSIDPAMAERVEHYDAGAEKLPLFEKHHIHEQIHKALDRKVWLP
SGGSLIIEHTEALTVIDVNTGKNVGRSSLEQTVFDNNLEAAEEVARQLRLRDIGGIIVID
FVDMEVAKNRDAVITTFREALSRDKTRTQVFDISELGLVEMTRKRIGEGLLESFADPCPS
CEGRGLVFDPAIYPGG
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacgacgacaaggccgggcgcggcaccgccgcccccacctccgaccgcgccgct
gagcgcgacacctccactcgctcgcgtccgcccgacgcgcctgccggcgtgacgggcggg
ggtggcgacgcccccaagcccaagatcggcgacacccgcccggcgccccccggtgccgac
accgggtcggccggctcccccgacgacgcctccggcgggtccgagggatccggcgggtcc
ggctcgggccgacgccgccggcgtggcagccgcggcgggcgcggccgacgctccggcggc
ggccagggcggcggcgaccagacctcctccgggggcgacggcggccgcagccgcgacggc
ggctccggcaaggccaaggccaaggggcgcggccagggtcagggccagggcggtggtggc
cggggccgcggcggccagggcggcggccggggcaagggtcgcggcgaggcgcccgccccc
gtgaccgcggtcacccacgccgcacccctcgagctcgacgacgacgtcctcgagcagcgc
cggggccgcgagcgcaagggcaaggccgtcggccgctacatgatggcggtccacgtccag
cccgaggccacccagatcgccatcctcgagggccgctcgctcatcgagcaccaggtgtcg
cgcccggccgacgacgtctcccagatccacggcaacgtctacctgggcaaggtccagaac
gtgctgcccggcatggaggccgcgttcgtcgacatcgggacgcccaagaacgcggtgctc
taccgcagcgatgcccgcttcgaccccgacgacgtcgacaaggcccccaagggccagccc
aagatcgagcagatgctcaaggccaagcagaccatcctctgccaggtcaccaagaacccc
atcgcccacaagggcgcccgcctcacccaggaggtgtcgctgcccggccgcttcgtcgtg
ctggtgcccaacagcaccacctacggcatctccaagcgcctgcccgacgacgagcgcaag
cgcctccggggcatcctcgaccgggtccgccccgagggccacggcctcatcgtccgcacc
gcagctgagggcgtcaccgccgaggagatcgagcgggacgtggagctgctggccgaccgc
tggacccagatcgaggccctggctgcgcagtcgcagggccagggcgccaccctcctctac
cgggagccggacatggccgtgcgggtcatccgggaggagctcaccaaggacttccgcaag
gtcatcatcgacgaccgggccctctacgaggaggtgcgggactacgtccgcagcatcgac
ccggcgatggccgagcgcgtcgagcactacgacgcgggggcggagaagctgcccctgttc
gagaagcaccacatccacgagcagatccacaaggcgctcgaccgcaaggtgtggctgccg
tccggcggctcgctcatcatcgagcacaccgaggcgctcaccgtgatcgacgtgaacacg
ggcaagaacgtggggaggtcgagcctcgagcagaccgtcttcgacaacaacctggaggcg
gccgaggaggtcgcccgccagctccggctccgcgacatcggcggcatcatcgtcatcgac
ttcgtcgacatggaggtggccaagaaccgcgacgcggtgatcaccaccttccgggaggcc
ctctcccgcgacaagacccgcacccaggtcttcgacatctccgagctgggcctggtggag
atgacccgcaagcggatcggggagggcctcctcgagtccttcgccgacccctgccccagc
tgcgagggccggggcctggtcttcgaccccgccatctacccgggcggctga
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