KEGG   Ipomoea nil (Japanese morning glory): 109149116
Entry
109149116         CDS       T04663                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
ini  Ipomoea nil (Japanese morning glory)
Brite
KEGG Orthology (KO) [BR:ini00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:ini03009]
    109149116
Ribosome biogenesis [BR:ini03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    109149116
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_EML_2 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML WDR55 Beta-prop_TEP1_2nd EIF3I NBCH_WD40 Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_HPS5 Beta-prop_TEP1_C Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_VPS8 Beta-prop_IP5PC_F WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st WDR90_beta-prop_4th Beta-prop_Vps41 Beta-prop_LRRK2 Beta-prop_RIG_2nd Beta-prop_DCAF4 Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_BBS7 Beta-prop_WDR19_1st PEP5_VPS11_N Nucleoporin_N DUF5984 WDR54 Beta-prop_DCAF12 CENP-F_leu_zip VPS11_N RVT_1
Other DBs
NCBI-GeneID: 109149116
NCBI-ProteinID: XP_019152308
LinkDB
Position
Un
AA seq 455 aa
MEPELVIASSSTDAGVSCWDLHSGAEHLSYKTCSSPSHGLAVVGGGRFLASSQLRQTRSS
SGSIFYWSWNKPQVEVKSFPAEPITPLVSNADGSFIAGGGASGDIYLWQVASGKLLKKWH
AHYRGVTCLVFIDDQSLLVSGAEDGSIRVWSLIMVFDDFLRQQAKRPFEHSFSEHTLKVT
DIVAGSGGANAIIISASEDRTCKVWSLSRGVVLRDIVFPSIIDAIALDPGEHVFYAGGRD
GKIYIGALNALAHSNSNFGPNIIGSLTEHSKGGITCLAFSMDGSLLVSGSENGTIQVWDT
KNHNITRIFRHGKGPVNNILVVRPPSHLSARTSITSHPSSTKRPGLPMPPPLEKYSISSD
ENNDVKAFIAPQNIPNVHLEASYVSCQTMNNQIRELEQRGSSAATEIETERLKVEHKKSM
QMLQQWQKTYRDLHQFCVSEILNGEQIGNADGEGM
NT seq 1368 nt   +upstreamnt  +downstreamnt
atggaaccggagctggtgattgcttcgtcgtcgaccgacgccggcgtcagctgctgggac
ctccactcaggagcggaacacctctcctataagacttgctcttccccctcgcacggcctc
gccgtcgtcggcggcggccgttttctggcctcctctcaactccgccaaaccagatcatct
tccggctccatcttttactggtcctggaataagcctcaagtagaagtaaagagctttcca
gctgaacctattacaccgcttgtttctaatgccgatggatcgtttatagctggaggtggt
gcgtctggagatatatacttatggcaggttgcaagtgggaaacttctcaagaagtggcat
gctcattataggggagtcacttgcttagtcttcattgatgaccaatcactattggtttcc
ggggcggaggatggaagtattagagtttggtcacttataatggtatttgatgattttctg
aggcagcaggcaaaacgtccctttgagcatagtttctccgaacatactctaaaggtgact
gatattgtggctggaagtggaggagcaaatgctataattatctctgcttctgaggacagg
acttgcaaggtatggagcttatcaagaggggtagtcttgagagatattgtctttccttca
ataattgatgctattgcattagaccctggtgaacatgtgttttatgctggtggtagagat
ggaaagatatatattggtgcacttaatgctttagcccactcaaacagtaactttgggccg
aacatcattggttctttgactgaacatagtaaggggggcattacatgcttagctttcagt
atggatggatccctgttggtgtctggatcagagaatggcacgattcaagtctgggatact
aaaaaccacaacatcactcgcatctttaggcatggaaaaggaccagttaacaatattctt
gttgttagaccaccatcacatttaagtgcacgaacatctattacttcacatccatcctca
acgaagaggccaggattaccaatgccaccaccattggaaaagtattctatttcttctgat
gaaaataatgatgtgaaagcattcattgccccacaaaacattcccaatgtacatcttgaa
gcatcatatgtcagttgccagaccatgaataaccaaatcagagaacttgagcaaaggggt
tcttctgcagcaactgaaatagagacggaaaggctaaaagttgagcacaagaaatccatg
caaatgctgcagcaatggcaaaagacataccgagatctacatcagttttgtgtgtctgag
atattgaatggggaacaaattggaaatgctgatggcgaaggaatgtga

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