Ipomoea nil (Japanese morning glory): 109149270
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Entry
109149270 CDS
T04663
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109149270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ini03041
]
109149270
Enzymes [BR:
ini01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109149270
Spliceosome [BR:
ini03041
]
Complex C
Other components
Step II factors
109149270
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
AAA_30
DUF4606
T2SSE
AAA_29
ABC_tran
ATPase
Motif
Other DBs
NCBI-GeneID:
109149270
NCBI-ProteinID:
XP_019152497
LinkDB
All DBs
Position
Un
AA seq
715 aa
AA seq
DB search
MPSMANPVNSPHKHHQNQLNNRKGDFLRRQNIEKQRKSLPIATVEKRLVEEVHNNDTLII
VGETGSGKTTQLPQYLYHGGFCNDGRIIGVTQPRRVAAITVAKRVAEECGVELGQRVGYA
IRFEDVTSNLTKIKYMTDGLLLREALLDPYLSKYSVIIVDEAHERTVHTDVLLGLLKNVQ
KARSKNVCGGVNIDSVKPKNELPLEDKKEAHSDGIFKKFHAKKYTPLKLVIMSASLDARV
FSEYFGGARAVHVQGRQYPVDIFYTLKPETDYIDAALITIFQIHMEEGPGDILVFLTGQE
EIESAERLVHDHLRHLPEGNKKLLTFPIFSSLPSEKQMKVFMPAPAGYRKVILATNIAET
SVTIPGIKYVIDPGLVKARTYDADMGIDSLIVVKTSKAQALQRSGRAGREGPGKCYRLYP
ESEFEKLDDSTIPEIKRCNLSNVVLQLKALGIDNIVDFDFIDKPKRIALVKSMETLFLLG
AITENNELSDPTGHQMARLPLEPMHSKALILAGEFGCLEEMLISVAMLSVESIFYAPREK
LEESRNALKSFASPEGDHLTLLNVYRASIEFFEKSKITNGELKAEKNLRKWCKDNFINSR
SLRHARDIHSQIRRNVEQMGLRVSSCGDDMLIFRRCLAASFFLNAALKQPDGTYRVLSSG
STVQIHPSSVLFRAKPECIVFNELVQTNYTYVRNISRIDYLWLAELAPHFYALQD
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgccttcaatggcgaatcctgtgaattccccacacaaacatcatcagaatcaactaaat
aacaggaaaggtgacttcctcaggcggcaaaacattgaaaaacaaagaaaatctttacca
attgctaccgttgaaaagcggcttgttgaggaggtacacaacaatgacacattaataatt
gttggagagactggtagtggaaagacgacacagttacctcagtacctttatcatggagga
ttttgtaatgatggtcgaattattggggtcactcaacccagacgtgttgcagccataact
gtcgcaaaacgagttgctgaggaatgtggtgttgaattgggtcaaagggttggctatgcc
attagatttgaggatgtgacttccaacttaacaaagatcaagtacatgacagatggtttg
cttcttagggaagcattattggatccatacctctccaagtattctgttattattgttgat
gaggctcatgagagaacagtccacactgatgtgttacttggcttgttgaagaatgtacag
aaagcaaggtcaaaaaatgtgtgtggaggggtaaatattgatagtgtgaagcctaagaat
gagcttccgttggaggataaaaaggaggctcattctgatggtatcttcaaaaagtttcat
gccaaaaagtacaccccgctgaaattggtaatcatgtctgctagtctggatgcacgtgtc
ttttctgagtactttggtggtgctagagcagttcatgttcaggggcgacaatatcctgta
gatatattttacacccttaagcccgagacagattacatagatgcagcattgattactatt
tttcagatacatatggaggagggccctggtgatatactggtttttcttactggccaagaa
gagattgaatctgctgagaggcttgttcatgaccaccttcgacatttacctgaaggcaat
aagaagctcttaacatttcccatattttcatctcttccctctgagaaacaaatgaaagtt
tttatgcctgcaccagctggatatcgtaaggtaatactggcaactaatattgctgagaca
tcagtgacaatacctggaatcaagtatgtcattgatcctgggttggtgaaagcacgtacc
tatgatgctgatatgggaattgactcactgattgttgtgaaaacatccaaagcgcaagca
ctgcagaggagtggtcgtgctggccgtgaaggacctggcaaatgctaccgcctttatccc
gaaagtgagtttgagaaacttgatgattctacaattccagaaatcaagagatgcaatctc
tcaaatgttgtgttgcagctcaaggctctggggattgacaatattgttgattttgatttc
attgataaaccaaagaggattgcattggtcaaatcaatggagactctctttctgttgggt
gctataacagaaaataacgaactgtctgatcccactgggcatcaaatggccaggctgcca
ctagaacccatgcattcaaaggctctcattcttgctggtgagtttggctgcctggaagag
atgctaatatctgttgcaatgctctctgtggaatccatcttttatgctccccgtgaaaag
ttggaagagtctcggaatgcattgaaaagctttgccagtcctgaaggagatcatttgact
ttgcttaatgtatatcgtgcttctatcgaattctttgagaagagcaagatcacaaatggc
gaactgaaagctgaaaagaatctcagaaagtggtgcaaggataatttcatcaacagccgc
tccctaagacatgcacgtgacattcacagtcaaattcgcaggaacgttgaacagatgggt
cttcgggtctcttcctgtggagatgacatgcttatcttccgtcggtgcttggctgcttca
tttttccttaacgcagctctaaagcagcccgatggtacatacagggttttatcaagtggc
tcgacagttcaaatccacccgtcttctgtgctgtttcgagcaaaacccgagtgcatagta
tttaatgaattagtgcagactaactacacgtatgttcgcaacatctctagaatcgattat
ttgtggttagctgagctcgctcctcatttctatgccttgcaagactga
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