Ipomoea nil (Japanese morning glory): 109149420
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Entry
109149420 CDS
T04663
Name
(RefSeq) DNA excision repair protein ERCC-8-like
KO
K10570
DNA excision repair protein ERCC-8
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03420
Nucleotide excision repair
ini04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
109149420
09124 Replication and repair
03420 Nucleotide excision repair
109149420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ini04121
]
109149420
03400 DNA repair and recombination proteins [BR:
ini03400
]
109149420
Ubiquitin system [BR:
ini04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
109149420
DNA repair and recombination proteins [BR:
ini03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
109149420
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WDR55
EIF3I
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
Beta-prop_RIG_2nd
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_SPT8
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_EML
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
WD_LRWD1
Beta-prop_LRRK2
Beta-prop_Nup120_160
Beta-prop_SCAP
WD40_RFWD3
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_1st
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
109149420
NCBI-ProteinID:
XP_019152728
LinkDB
All DBs
Position
Un
AA seq
454 aa
AA seq
DB search
MWKEIRDRESGKLRPNSYSNRVKLNRLAAIQLSNHKEIVSPHRGPVNSLQVDLTEQRYLL
SCASDASVAVYDVQRATGHEGGGLIAKHKPLFVVDKRHEQGHKYAVSTAIWYPVDTGLFV
TGSYDHRVNVWDTNTTQVVVNFKMPGKVNKTAMSSLATSHMLIAAGTEDVQVRLCDIASG
AFAHTLSGHRDGVMSMEWSSSSEWVLMTGGCDGAIRFWDIRRAGCFRVLDQSHSQLGRRP
PVLARSAVNKSSTSKSPSVNQTSSLKSRPSQRKTVISNGHKQSVIDRQVRVSSKQRLHPG
LLSSQDRATAHYGVVSSLKVTDDGLYLLSAGSDSRLRLWDIESGCNTLVNFETGRLQTTK
ALQMAISEDSTVVFVPCMATTKAFNLWSGKAMMNFRGHYENVNCCWYNAQDQELYTGSND
RKILAWSPPKTVIEESEGKMKQQSMVADEDCWSD
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgtggaaggaaatcagggacagagaatcagggaaacttcgacctaattcgtacagcaac
cgagttaagttgaaccgactcgctgctattcagctctccaatcacaaagagatcgtctcc
cctcaccgcggccccgttaactctcttcaggttgatttgacagagcaaaggtatttacta
tcctgtgcttcggatgcatcagttgctgtttatgatgtccaacgtgcaacaggtcatgag
ggaggtggattgatcgctaagcataagcccctttttgttgttgacaaacgacatgaacag
ggccacaaatatgccgtttctacagccatatggtatccagttgacactggcctgtttgtc
actggttcatatgaccatcgcgttaatgtatgggacacaaacacaacacaggtggttgtt
aattttaaaatgcctggaaaggttaataagactgccatgtcttctctggcaacatctcat
atgctaattgctgctggaactgaagatgtacaagttcggctttgtgatatagcttcaggg
gcctttgctcacactttgtctggtcatcgtgatggagtgatgtcaatggaatggtcttct
tctagtgagtgggttctcatgactgggggatgtgatggtgcaattcgtttttgggacatt
aggcgagcaggatgctttcgtgttttagatcagtcccattctcagcttgggagacgccca
cctgtacttgcacgttctgctgtgaataagagttcaacatctaaatctccatcagtaaat
cagacttcatctttaaagtcccggccatctcaacggaaaactgtaatcagtaacggtcac
aaacagtctgttattgacagacaagttagggtgtcatcgaagcagagactacatccaggg
ctgttgtcgagtcaggatcgtgccactgctcattatggtgtagtaagcagtttgaaagtg
actgatgatggtttgtatcttctcagtgcaggttctgattcaaggttaaggttatgggat
atagagtctggttgcaatacactagtgaactttgaaactggacgccttcaaaccaccaaa
gcactacaaatggcaatatccgaggattcaactgttgtctttgttccatgcatggctacc
actaaagcattcaatttatggtcgggcaaggcaatgatgaatttccgtgggcattatgaa
aatgtaaattgttgttggtacaatgctcaggaccaggaactatacactggaagtaatgac
aggaaaattctcgcgtggtctccccccaaaactgttattgaagaatcagagggaaagatg
aaacagcaaagtatggtcgctgatgaagattgttggagtgactga
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