Ipomoea nil (Japanese morning glory): 109149483
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Entry
109149483 CDS
T04663
Name
(RefSeq) polyadenylate-binding protein 2
KO
K13126
polyadenylate-binding protein
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03015
mRNA surveillance pathway
ini03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109149483
09123 Folding, sorting and degradation
03018 RNA degradation
109149483
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ini03019
]
109149483
03041 Spliceosome [BR:
ini03041
]
109149483
Messenger RNA biogenesis [BR:
ini03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
109149483
mRNA cycle factors
Stress granule specific factors
109149483
Spliceosome [BR:
ini03041
]
Complex C
Other components
Complex C specific factors
109149483
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_ACIN1
RRM_MUD2_C
RRM_RdRP1_2
RRM_YTH1
Cupin_NOL9
Motif
Other DBs
NCBI-GeneID:
109149483
NCBI-ProteinID:
XP_019152816
LinkDB
All DBs
Position
Un
AA seq
654 aa
AA seq
DB search
MAATAVHTAVAALAGATSAVSVGPAPPLSPTGAMVAFTNSSLYVGDLDPSVDEGQLYDLF
NQVAQVVSVRVCRDQSRRVSLGYAYVNFGTPQDALSAREVLNFTPVNGKPIRIMFSHRDP
SIRKTGFANVYIKNLESSIDNKALYETFAAFGTVLSCKVAVDGNGKSKGHGFVQFDAEEA
ANNAIKRLNGMLINDKQVYVGRFIRRQERSGGYVPEKFTNVYVKNLSETTSDEDLDKLFK
KFGPITSAVVMKDGNGKSKCFGFVNYQNTDDAAAAVKELNGSTMNDKVLYVSRAQKKSER
EAELKAKFEQERASRFDKLKHSNLYLKNLDDSITDEKLKEIFSGYGTISSCKVMLDPQGT
SKGAGFVAFTNPDEAQRALTEMNGKLIGRKPLYVAVAQRKDERRAWLQAHFAQMRPTGAM
PPLPAGIPGYHPGAPRLAAPQQIYFGQGTPGLMPPQAAAGYGFQQPLVPGLCPGVAPNFI
MPYQLHRQGQAPQRVGARRGANTQPTQQWMQRNSNQGGLGRYTANGNHPTSLASQGLMGP
IMPLPFDVSGGVAAPAMDNQRPAPIPTPTLASTLASASPEDQRMMLGEQLYPLVERLERD
QAGKVTGMLLEMDQTEVLHLIESPEALKKKVAEAMEVLRSASDSNGGDKFASAI
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atggcggctactgcggtgcacacggcggttgcggctctggccggcgcgacttctgctgtt
tcggtgggcccggcgccgcccctgagtccgacgggcgcaatggtagcgttcacgaactcg
tcgctctacgtcggcgatctcgatccttcggtcgacgaaggacaactgtacgatctgttc
aaccaggttgcgcaagtggtatcggttagggtttgcagggatcagtccagacgcgtctcc
ctcggctatgcctacgttaatttcggcactccacaagatgcccttagtgcaagggaagtt
ttgaactttacgcccgtcaatggaaagcccataaggattatgttttctcatcgagatccc
agtatccgcaagactggatttgcaaatgtttacataaagaatttggagtcctccattgat
aacaaggctttgtatgagacatttgctgcctttgggactgttctttcctgcaaggttgcc
gttgatggtaatgggaaatcgaaagggcatgggtttgtacagtttgatgcagaggaggct
gcaaacaatgcaatcaagcgactgaatggcatgctgataaatgataaacaagtttatgtt
ggccgctttattcgcagacaggaaaggagtggaggctatgttccagagaagtttaccaac
gtttatgtgaagaatctttctgaaacaacatcggatgaggatctcgacaagctttttaag
aaatttggtcccatcaccagtgctgttgttatgaaggatggcaatgggaaatccaaatgc
tttgggtttgttaactaccaaaacacagatgatgctgctgctgctgtcaaagaattgaat
ggaagtaccatgaatgacaaggttttgtatgtgagtagggctcagaagaaatctgaaagg
gaagcagaattgaaggcaaaatttgagcaagagagagccagtagatttgacaagttaaag
cactctaacctgtatttgaaaaatcttgatgacagcataactgatgaaaaactgaaagag
atattctcagggtacggaaccatatcatcgtgcaaggtgatgcttgatccacaaggaacc
agcaagggtgctggctttgtagcctttactaacccagatgaagctcaaagagccttgact
gaaatgaatggaaaattgattggaagaaagcctttgtatgttgctgttgcccagcgcaaa
gacgaaaggagggcttggctacaggcacattttgcacagatgcgaccaacaggtgcaatg
ccaccattgcctgcagggatccctggatatcaccctggggcacccagacttgctgcccct
caacagatctattttggtcaaggtactcctggattgatgccccctcaggcggctgccggg
tatggttttcagcaaccacttgtgccagggctgtgtcctggtgttgccccgaattttatc
atgccataccaactccatcgccagggacaagctccacaacgtgttggtgcgaggagaggt
gcaaatactcaaccaacacagcagtggatgcagcggaactccaaccaaggcggtcttggt
agatacacagcaaatggtaatcatcctactagtctggcatctcaaggtctgatggggcca
attatgccattgccattcgacgtttctggaggggttgcagcacctgctatggacaatcaa
cgccctgcaccaattcccacaccaactcttgcttcaaccttggcctccgcttcccctgag
gaccagcgaatgatgcttggagagcagttatatccgctagtagagcggcttgaacgtgac
caagcgggaaaagtaacaggcatgttgttggagatggaccagacagaagtgctccacctt
attgagtcccctgaggccctcaagaagaaagtcgctgaggccatggaagtccttcgctct
gcttctgactctaatggcggcgataagtttgcctctgcaatctaa
DBGET
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