Ipomoea nil (Japanese morning glory): 109149580
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Entry
109149580 CDS
T04663
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 28
KO
K13181
ATP-dependent RNA helicase DDX27 [EC:
5.6.2.7
]
Organism
ini
Ipomoea nil (Japanese morning glory)
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ini03041
]
109149580
03009 Ribosome biogenesis [BR:
ini03009
]
109149580
Enzymes [BR:
ini01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109149580
Spliceosome [BR:
ini03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
109149580
Ribosome biogenesis [BR:
ini03009
]
Eukaryotic type
Pre-60S particles
Helicases
109149580
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ARTD15_N
Motif
Other DBs
NCBI-GeneID:
109149580
NCBI-ProteinID:
XP_019152959
LinkDB
All DBs
Position
Un
AA seq
744 aa
AA seq
DB search
MVTSDFVFEPPSDEEVEYAYDGQSEEEEEDDDGIGENETSSRAKNKKSQSPWDFSTYSES
VADEHARRSTTSVDYKISKALQQRAAPIAADDDEEDDGDSDYEPHHQEDYVPEDDDDDVD
TSNVDRKSFFASAEGVSFHANSFMELHLSRPLLRACEALGYAKPTPIQAACIPLALTGRD
ICGSAITGSGKTAAFSLPTLERLLYRPKNRPAIRVLILTPTRELAVQVHSMIEKLAQFMT
DIRCCLVVGGLSVKEQVSALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL
LELGFSAEIRELVRLCPKRRQTMLFSATMTEEVDELIKLSLNKPLRLSADPSAKRPSTLT
EEVVRIRRMREGNHEAVLLALCSKTFTSKVIVFSGTKQAAHRLKILFGLAGFKAAELHGN
LTQAQRLGALEIFRKQEVDFLIATNVAARGLDIIGVQTVINFACPRDLTSYVHQVGRTAR
AGREGYAVTFVTDNDRSLLKAIVKRAGSRLKSRIVAEQSIIKWAKLIEQMEDQVAEILQE
EREEMILRKAEMEVTKAENMIAHKDEIYSRPKRTWFMTEKEKKLVAKAAKGSMEKGRDSV
NKVISAEQAEDLKMKEKRKREREKNLPRKQRRKLEASRELLEDENGSDERNEKTKKDKTG
ITLVDLAYRRAKSVKAAKKAADAGKIIRKEGKKTKRPTKVTQSRTEEMRELFKSDMSEEK
KKRPHSGGVKKKSSFKSKSRYKRR
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atggttacttccgatttcgtgttcgaacctcccagcgatgaagaagttgaatacgcgtac
gacggtcaaagcgaagaagaagaggaggatgacgacggcataggggaaaacgaaactagc
tcccgagctaaaaataagaaatcgcagtcgccgtgggacttctcaacctattccgaatcc
gtcgccgatgaacatgctcgccggagcaccacttcagtggattacaaaatctccaaggct
ctccaacaacgcgcggctccaattgccgccgacgacgacgaggaagacgacggcgatagc
gattacgagccgcaccaccaggaggactatgttccggaggatgacgatgacgacgttgac
acaagtaatgtcgatagaaaatcattctttgcgtcagctgagggagtctcattccatgct
aactcgttcatggagcttcatctgtctaggccattgcttcgagcttgtgaagcattaggc
tatgctaaacccaccccaattcaggctgcttgtattcctttggcattaactggtcgtgat
atatgtgggagtgctattacaggctctgggaagacagctgccttctcattaccaacacta
gagagacttttgtaccgtcctaagaatcggcctgctattagggtgctcattcttacccca
accagagagttggctgttcaagtccatagtatgatagaaaaacttgcgcaatttatgact
gatatcagatgctgtttggttgttggtgggctttcagtgaaggaacaagtttcagccttg
agatcaatgcctgatattgttgttgctactccaggacgcatgatagatcatctacgcaat
tctatgtccgttgatttggatgatcttgcagttcttattcttgatgaagcagatcgactt
ctggagcttggctttagtgctgaaattcgtgaactggttagactctgccccaaacgtagg
caaaccatgttattctctgcaactatgactgaagaagttgatgagcttatcaaactctct
ttgaataaacctttgcgcctatctgccgatccttctgcaaaaagaccatcaacattaact
gaagaggtggttaggatacggcgaatgcgggaaggaaaccacgaggcagtgcttcttgcc
ttgtgctccaaaacattcacatctaaagtgattgttttcagtggaacaaagcaggcagcc
catagattgaagattttatttggtttagctggttttaaagctgccgagctacatggaaac
cttacgcaggctcaacgtctgggtgctctggaaattttcaggaaacaggaggtggatttt
ctgattgcaactaatgttgctgctcgtgggcttgacattattggagttcaaactgttata
aattttgcatgtccccgagatcttacaagttacgttcatcaagtgggtcgtacagctaga
gctggtagagaaggctatgctgttacatttgtcactgataatgatcgctcacttctgaaa
gccattgttaaacgagctggttcaaggctgaagagtcgaattgttgctgagcaatcaata
atcaaatgggctaaactaattgagcaaatggaggaccaagttgcagaaatccttcaagaa
gagagggaagaaatgattctgaggaaagctgaaatggaagttacaaaggcagaaaatatg
attgcacacaaagatgagatttattcacgccctaaaagaacatggtttatgacagaaaag
gagaaaaagcttgtggcaaaggcagctaaaggctctatggagaaaggaagggattctgta
aacaaggtaatcagtgctgaacaagcagaagacctcaagatgaaggaaaagaggaagcga
gagcgtgagaaaaatctgcctagaaagcaaaggaggaagttggaggcttcccgagaacta
ttagaagacgaaaatggttcagatgaaagaaatgagaaaacaaagaaagacaagacggga
attacccttgttgatctagcttatcgtcgggcaaaatcagtcaaggctgcaaagaaggcg
gctgatgctggcaagattataagaaaggaagggaaaaaaacaaaacgacctaccaaagta
actcaatccaggacagaggagatgcgagaacttttcaaatctgatatgagtgaggagaaa
aagaagagaccacattctggtggggtaaagaagaaatcttcattcaaaagcaagtcaagg
tacaagagaaggtaa
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