Ipomoea nil (Japanese morning glory): 109149739
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Entry
109149739 CDS
T04663
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109149739
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ini03041
]
109149739
Enzymes [BR:
ini01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109149739
Spliceosome [BR:
ini03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
109149739
Complex C
U4/U6.U5 tri-SnRNP related factors
109149739
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
AAA_22
DEAD
AAA_19
AAA_30
T2SSE
nSTAND3
PWI
SRP54
Cas3-like_C_2
PhoH
AAA_23
AAA_16
ABC_tran
Motif
Other DBs
NCBI-GeneID:
109149739
NCBI-ProteinID:
XP_019153234
LinkDB
All DBs
Position
Un
AA seq
1057 aa
AA seq
DB search
MGSDLKNWVSDNLMSLLGYSQSTLVSYVIGLAKNASSPNELVSKLIEVGVSSNHKTQAFA
LEIFSRVEHKAAGPNLYQRQEREAAMLARKQKTYALLDDDDEDGDGDVSGTAGSNAGPVS
SQTRREEGHGKRFRRRAETDADEDEDEEKIKEAEQERRVRRRTSEEDDDGADSSESEEER
LRDQREREELERHIRERDAAATKKLTEPKLSRKEEEEAIRRSDALERDEIGTLRKVSRQE
YLKKREQKKLEELRDEIEDEQYLFNGVKLTEAEYKEMRYKKELYDLIKKRTEEDDNTNEY
RMPDAYDVEGGINQEKRFAVALQRYRDPEANDKMNPFAEQEAWEDHQISKATLKFGSKDR
KANSEDYQFVFEDQIDFIKAAVMEGVNVDQESAVDELEASVAKSAFEKLQADRKTLPIYP
YRDELLQAINDHQVLVIVGETGSGKTTQIPQYLHEAGYTKRGMVGCTQPRRVAAMSVAAR
VSQEMGVKLGHEVGYSIRFEDCTSEKTLLKYMTDGMLLREFLGEPDLASYSVIMVDEAHE
RTLSTDILFGLVKDISRFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRFPVEIHYT
KAPEADYLDAAIVTALQIHVTQPPGDGDILVFLTGQEEIETAEEIIKHRVKGLGTKIAEL
IICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIDPGFCKMKSYNP
RTGMESLLITPVSKASANQRAGRSGRTGPGKCYRLYTAYNYYNDLEDNTVPEIQRTNLAN
VVLSLKSLGIHDLLNFDFMDPPPAEALLKALELLFALSALNKLGELTKVGRRMAEFPLDP
MLSKMIVASEKYKCSDEIITIAAMLSIGNSIFYRPKDKQVHADNARLNFHMGNVGDHLAL
MKVYNSWKETNFSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIELTSNLNDLEPIKK
CITSGFFPHSAKLQKNGSYRTVKHPQTVHIHPSSGLAQVLPRWVVYHELVLTSKEYMRQV
TELKPEWLVEIAPHYYQLKDVEDHVSKKMPRGEGRAS
NT seq
3174 nt
NT seq
+upstream
nt +downstream
nt
atgggaagtgatttgaaaaattgggtatctgataatttgatgtcacttttgggctactcc
caaagtacacttgttagttatgtgattggtttagccaagaatgcttcctctcctaacgag
cttgtgagcaagcttattgaagtgggagtatcatctaaccacaaaacacaggcttttgca
ctagagattttttctagagttgagcacaaggctgcagggcctaatctatatcagcggcaa
gaaagggaggcagcgatgcttgcaaggaagcaaaagacctatgcacttctggatgatgat
gatgaggatggtgatggtgatgttagtggtactgctggcagtaatgctggtcctgtgtct
tcacaaactaggagagaggagggtcatggcaagagatttaggaggagggctgaaactgat
gctgatgaagatgaagatgaagagaaaattaaggaagccgaacaggaaagacgagtcagg
agacgaacttctgaagaagatgatgatggtgctgatagttctgagtcggaagaagaaagg
ctgcgtgaccaaagagagagggaggagttggagaggcatataagggaaagggatgcggca
gcaacaaaaaaattgactgagccaaagttatcaagaaaggaggaagaggaggcaattagg
agatctgatgctttggagcgagatgagattggaactttgaggaaagtctcacggcaagaa
tatttaaagaaaagagagcaaaagaaattagaagaactccgggatgagatagaagatgag
caatacttatttaatggagtgaagttaactgaagcagaatataaggagatgagatacaag
aaagagttatatgatctaattaagaagcggactgaggaggatgataatacaaatgagtat
aggatgcctgatgcttatgatgttgaaggtggtataaatcaagagaagaggtttgccgtc
gcattgcaacgctacagggatcctgaggctaatgataagatgaacccatttgctgaacaa
gaagcatgggaggatcaccaaatctccaaggctacactcaaatttggttcaaaagacaga
aaggcaaactccgaagattaccaatttgtgtttgaagaccagatagatttcataaaagca
gcagttatggagggtgttaatgttgatcaagaatctgctgttgatgaactagaagcatct
gtggctaaatcagcatttgagaaactacaggcagacaggaaaactctccccatctaccca
tatagggatgagttgctccaggctataaatgatcatcaggtcctagtcattgttggagaa
acaggttctgggaagacaactcagatacctcaatatttgcatgaggcggggtacaccaaa
cgtggaatggtaggatgcacccagcctcgccgagttgctgccatgagtgttgctgcccgt
gtttcccaagaaatgggagtcaaacttgggcatgaggttggttattcaatccggtttgaa
gattgcacttctgagaaaacccttctaaaatatatgacagatgggatgctattgcgtgag
tttcttggggaacctgatttggcaagttacagtgtgatcatggtggatgaggcccatgaa
agaacattatcaactgatatcctgtttggcttggttaaggatatttctcgtttccgtcct
gacctcaagcttctaatatcaagtgctactcttgatgcggagaagttcagtgactatttt
gattctgcgcccatttttaaaatacctggaaggcggtttcctgttgagatacactatact
aaagcaccagaggctgattacttggatgcagcaattgtcactgccctacagatccatgtg
acgcaaccccctggtgatggtgatatattagtttttttaactggacaggaggagatcgag
acagccgaggagattattaagcatagggtcaagggcctgggaacaaaaatagcagagcta
ataatctgcccaatatatgctaacctgccaactgagctccaagccaaaatttttgaacct
actcctgaaagagcacggaaggttgtccttgctacaaatattgctgaaacttcattgaca
attgatggaatcaaatatgttattgatcctggattttgtaagatgaagtcttataaccct
cgtactggcatggagtcattacttatcactcctgtttcaaaggcatctgctaaccaacgg
gcaggtcgttctggacgaacaggacctggaaagtgctatcggttgtacactgcttataac
tactacaatgatttggaagataatacagttccagaaattcagaggaccaaccttgcaaat
gtagtgctttctctcaagagccttggcattcatgacttgctaaactttgattttatggac
ccaccacctgctgaagctctattgaaagcacttgaattgctttttgctctaagtgctctt
aataagcttggggagctgactaaagttggcagaagaatggcagagttccctcttgacccc
atgctctccaagatgattgttgcttctgagaagtataaatgctctgatgagatcataact
attgcagcaatgctttctattggaaattcaatcttctatcgcccaaaggacaaacaagtc
catgctgacaatgcacggttgaatttccatatgggcaatgttggagatcatcttgcactt
atgaaggtttataattcatggaaggaaactaacttttcaacccaatggtgctatgagaac
tacatacaggtcagaagcatgaagagagctagagatatcagagaccaattggagggcctt
ttagaaagagtagaaattgagttgacttcaaatctcaatgatctagaacctataaagaag
tgtataacatctgggttctttcctcactcagcaaagctgcaaaagaatggatcttatcga
actgttaagcatccccagactgttcatatccatccaagctcgggcctagcacaggttctt
cctagatgggttgtctaccatgagctggttttgacgagcaaagagtacatgcggcaggtt
actgaactaaagcctgaatggttggtagaaatagctcctcactactatcagttgaaggac
gtagaagaccatgtgtccaagaaaatgccacgtggagagggccgagcatcttag
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