Ipomoea nil (Japanese morning glory): 109150296
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Entry
109150296 CDS
T04663
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109150296
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ini03019
]
109150296
03012 Translation factors [BR:
ini03012
]
109150296
Enzymes [BR:
ini01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109150296
Messenger RNA biogenesis [BR:
ini03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109150296
Translation factors [BR:
ini03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
109150296
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
T2SSE
ATPase
AAA_19
SR-25
BEX
Motif
Other DBs
NCBI-GeneID:
109150296
NCBI-ProteinID:
XP_019153736
LinkDB
All DBs
Position
Un
AA seq
1039 aa
AA seq
DB search
MSLRLLFYCPTSFQFRLYKPLSVTRSNCNYNLCSRRVPTLAMSNRPNYQGGRRGGAGRGR
SGGGGGGRGAGGGGGRGGGRGGEQRWWDPAWRAERLRQKAAEMEVMNENEWLGKIEQFKR
GGEQEMIIKRNFSRDDQGKLSDMAYHFGLHFHAYNKGKALVVSKVPLPNYRADLDERHGS
TQEIRMSTEIERKVGNLLSSSQASVSDGNSSSTHSYTANVSSNAVHAARAAATLESDGAK
ERLNAELKQKQEKLKATDNVKAMMSFREKLPAFKVKSEFLKAVASNQVLVVSGETGCGKT
TQLPQFILEEEIASSRGANCNIICTQPRRISAISVAARISSERGENLGETVGYQIRLESK
RSAETRLLFCTTGVLLRQLVQDPCITGITHLLVDEIHERGMDEDFLLIILRDLLPRRPDL
RLILMSATINAELFSKYFGNAPTIHIPGLTYPVSELFLEDVLEKTRYRIKPEYDNVQGNS
RRRHRQQESKKDPLTELFEDVDIDSRYKGYSMTTRQSLEAWSGSQLDLGLVEATIQHICC
HEGDGAILVFLTGWDDISKLLDKIKVNNFLGDSKKFLVLPLHGSMPTVNQREIFDRPPPN
VRKIVLATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRA
GRVQPGVCYRLYPKLLHDAMLEYQLPEILRTPLQELCLHIKSLQLGAISSFLNKALQPPD
PLSVQNAIELLQTIGALDDAEELTPLGRHLCTLPLDPNIGKMLLMGSFFRCLNPALTIAA
ALAHRDPFVLPINRKEEADAAKRSFAGDSCSDHIALLKAYEGWKDAKRQGQERAFCWENF
LSPITMQMMSDMRMQFLDLLSDIGFIDKSKGPQAYNEYSNDLEMVCAILCAGLYPNVVQC
KRRGKRTAFYSKDVGKVDIHPASVNASVHLFPLPFLVYSEKVKTSSIFIRDSTNISDYTL
LMFGGNLIPSKSGDGIEMLGGYLHFSASKSVLELIKKLRGELDKLLKRKIEEPGLDISTE
GKGVVAAVVELLHSQNVRY
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atgtcactgcgacttctcttctactgtccgacttcctttcagttccgtttgtacaagccg
ctttcagttacgcgaagcaactgcaactacaatctctgtagtcgtcgggtaccgacctta
gccatgtccaatcgtcccaactaccaaggtggccgtcgcggcggcgctggccgcggccgc
agcggtggtggtggaggagggcgaggtgccgggggtgggggcggccgtggcggagggcga
ggtggggagcagcgctggtgggaccccgcctggcgagctgagcgtcttcgtcagaaagct
gccgagatggaggtaatgaacgagaatgagtggttgggaaaaattgagcagttcaagaga
ggaggagagcaggagatgataattaagagaaactttagcagggatgatcagggaaagttg
tctgatatggcatatcatttcggacttcactttcatgcgtataacaagggtaaggcactt
gttgtgagcaaagttccattacctaattaccgggcagatcttgatgagcgccatggatca
acacaggagatacgaatgtctacggagattgagagaaaagttggaaatctattgagcagt
tcacaagcatctgtgtctgatggaaattcctcttctacacactcatatactgccaatgta
tcatctaatgctgtacatgctgcaagagctgccgctacattggagagtgatggtgccaag
gagagacttaacgctgaacttaaacagaaacaagaaaagctgaaggcaactgataatgtt
aaggcaatgatgtcattcagagaaaaacttccagcatttaaagtaaaatctgagtttttg
aaagcagttgcatcaaatcaggtactggtagtatcaggagagactggctgtgggaaaacc
actcagcttcctcaattcattttggaggaagagatagcatcttcacgtggagccaattgc
aacataatttgtacgcaacctcgtcgtatatctgccatatctgttgcagctcgaatctcc
tctgaaaggggtgaaaatctaggagaaactgttggttaccagatccggctggagtcaaag
cggtctgctgaaacaaggttattgttttgtacgacaggggtgctgctgcgtcaactggtt
caggacccatgtataactggaattacccatttgttggtcgatgaaattcatgaacgaggc
atggatgaagattttcttctaataattctacgtgaccttcttccccggcgtcctgatctg
cgtctcattctgatgagtgctaccattaatgctgagctgttttccaagtactttggaaat
gcacccacaattcatatcccgggactaacctatcctgtatcagaattatttctagaagat
gtattagaaaaaacccgttacagaataaagccagagtacgacaatgttcagggaaactca
aggagaaggcaccgtcaacaagaatctaagaaagatcctttgactgagttatttgaggat
gtggacattgattcccgttacaagggctacagcatgacaacaagacaatctcttgaagct
tggtcaggttcacagcttgatttgggccttgtggaagcgactattcagcatatctgttgt
catgaaggtgatggtgcaattcttgtttttcttactggttgggatgatatttccaagctg
cttgataaaattaaagtcaataatttccttggagattcaaaaaagtttttagttctccct
ctacatggctcaatgcctacagttaaccagcgagaaatatttgatcgcccaccccctaat
gttaggaaaattgttcttgcaacaaatattgcagaaagcagtataactattgatgatgta
gtgtatgtcattgactgtggaaaggctaaagagactagttatgatgcacttaacaaactg
gcttgtttattaccatcatggatttcaaaggcctcagcacatcagaggcgtggtcgtgct
ggtcgtgtgcaacctggtgtttgttatagattgtacccaaaactactacatgatgctatg
cttgaatatcaacttcctgagattcttcgtacacctttacaagagctttgcctccatatt
aagagcttacagttgggagctatcagttcatttctgaacaaggcacttcaacctccagat
cctctctctgttcaaaatgctattgaacttctccaaacaattggagctctagatgatgca
gaggagcttactccacttgggcgccacttatgcactttgcctttggacccaaatattgga
aaaatgcttctgatgggttccttcttccgatgcctaaaccctgcactgacaattgctgct
gctcttgcacatcgagatccatttgtccttcctataaataggaaagaggaagcagatgct
gcgaaaagatcctttgctggtgattcttgcagtgaccatattgcacttctcaaagcttat
gaaggatggaaagatgctaagcggcagggtcaggaaagagccttctgttgggaaaacttc
ttgtcaccaataaccatgcaaatgatgtcagatatgagaatgcaatttctggatcttctt
tctgatattggttttattgataaatccaaaggtccgcaggcttacaatgaatacagtaat
gatttggagatggtatgtgcaatcctctgtgctgggctctaccctaacgttgttcagtgc
aaaagaagaggaaaacgcacagcattttactccaaggatgttggaaaagttgatattcat
ccagcatctgtcaatgccagtgttcatctcttccctctccctttcttggtctacagcgaa
aaggtcaaaacaagcagcatcttcataagagactcgacaaacatatcagactacacgctt
cttatgtttggtggtaatctgattcctagtaaaagcggagatggtattgaaatgctcggg
gggtaccttcacttctctgcgtcaaagagcgtgctggaattaataaagaaattgagggga
gagcttgataaacttctgaagagaaaaattgaggagcctggccttgacatttcaaccgag
ggaaagggtgtcgttgctgctgttgttgagctgttacacagtcagaatgttcgctactga
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