KEGG   Ipomoea nil (Japanese morning glory): 109151052
Entry
109151052         CDS       T04663                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
ini  Ipomoea nil (Japanese morning glory)
Pathway
ini03030  DNA replication
ini03410  Base excision repair
ini03420  Nucleotide excision repair
ini03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ini00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    109151052
   03410 Base excision repair
    109151052
   03420 Nucleotide excision repair
    109151052
   03430 Mismatch repair
    109151052
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ini03032]
    109151052
   03036 Chromosome and associated proteins [BR:ini03036]
    109151052
   03400 DNA repair and recombination proteins [BR:ini03400]
    109151052
DNA replication proteins [BR:ini03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    109151052
  DNA Replication Termination Factors
   ELG1-RFC complex
    109151052
Chromosome and associated proteins [BR:ini03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    109151052
DNA repair and recombination proteins [BR:ini03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     109151052
  Check point factors
   HRAD17(Rad24)-RFC complex
    109151052
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_lid_RFC1 AAA_22 Rad17 RuvB_N AAA_11 Mg_chelatase AAA_16 nSTAND_NTPase5 SLFN-g3_helicase nSTAND3 AAA_5 AAA_14 ResIII AAA_assoc_2 PhoH AAA_2 AAA_24 AAA_7 AAA_28 AAA_19 RNA_helicase AAA_25 AAA_30 bpMoxR Parvo_NS1 DNAX_ATPase_lid DUF815 AAA_18 TIP49 NPHP3_N NB-ARC
Other DBs
NCBI-GeneID: 109151052
NCBI-ProteinID: XP_019154502
LinkDB
Position
Un
AA seq 339 aa
MAPVLQSSQQWVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL
AIAHQLFGPEMYKSRVLELNASDDRGINVVRTKIKNFAAVAVGSGHQSGYPCPPFKIIIL
DEADSMTEDAQNALRRTMETYSRVTRFFFICNYISRIIEPLTSRCAKFRFKPLTEEIMSS
RILHICNEEGLNLDSEALSTLSTISQGDLRRGITYLQSAARLFGSSISSRDLITVSGVIP
EEVVHAIFSACKSGNFDLADKEVNNVIAEGYPASQMLSQLYDLVVEADDISDEQKARICK
KLGETDKFLVDGADEYLQLLDVASITMQTLCNMPQEMTY
NT seq 1020 nt   +upstreamnt  +downstreamnt
atggcgcctgttctgcaaagttctcagcaatgggtggagaaataccgaccgaagcaagtg
aaagatgtagctcaccaagatgaggttgttcgagtcctcacaaacacacttgagactgct
aattgcccgcacatgctgttttatggccctcctggcactggcaaaacaacaactgctctt
gccattgctcatcagcttttcgggcctgaaatgtataagtcgagggtgttggaacttaat
gctagtgatgaccgtggtataaatgttgttcgcacaaaaataaagaattttgctgctgtt
gctgttggttctggtcaccaaagtggctatccttgcccacctttcaagatcataatcctt
gatgaagcagattcaatgactgaagatgctcagaatgctttgcgacgcactatggaaacg
tactccagagttacaagattcttctttatttgtaattacatcagcaggatcatagagcca
cttacttctagatgtgccaaatttagattcaagccacttacagaagaaattatgagcagc
cgcatactacacatttgcaatgaggaaggtcttaacttggactcagaggctctttcaacc
ctcagtactatctctcaaggtgatctacgtaggggtataacatacttacaaagtgctgct
cgcttgtttggatcatctatttcatccagggatttgataactgtttctggggtaatccca
gaggaagttgttcatgcaatattttcagcttgtaaaagtggcaactttgacttagcagac
aaagaagtgaataatgtaatagcagaaggatatccagcttctcagatgctttcccagcta
tatgatttagttgttgaagcagatgacatatctgatgaacagaaagcaagaatatgcaag
aaattgggagaaacagataagtttcttgtagatggagcagatgaatatttgcagcttttg
gatgttgcaagcatcactatgcaaacactttgcaacatgccgcaggaaatgacctactag

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