Ipomoea nil (Japanese morning glory): 109152817
Help
Entry
109152817 CDS
T04663
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109152817
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ini03019
]
109152817
03036 Chromosome and associated proteins [BR:
ini03036
]
109152817
Enzymes [BR:
ini01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109152817
Messenger RNA biogenesis [BR:
ini03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
109152817
mRNA degradation factors
5'-3' decay
Decapping complex
109152817
Chromosome and associated proteins [BR:
ini03036
]
Eukaryotic type
Gene silencing
piRNA pathway
109152817
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Sirohm_synth_M
Motif
Other DBs
NCBI-GeneID:
109152817
NCBI-ProteinID:
XP_019156018
LinkDB
All DBs
Position
Un
AA seq
503 aa
AA seq
DB search
MNARRRYSPGTGNGGGDGYGGGGFQSNHNSRGGYRQGRNPYYQYGQQHYPSQPQQYGKRS
LQNEPHQQQQQWLRRNASGAPPESSYNEVRKTIHSDGIDSSSNVWKARLNIPPPDTRYRT
EDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKT
ASFCIPALEKIDPDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVSTGGTSLKDD
IMRLYQPVHLLVGTPGRILDLAKRGVCILKDCAMIAMDEADKLLSPEFQPSVEQLIMFLP
RHRQILMFSATFPVTVKDFKDRYLQKPYIINLMDELTLKGITQFYAFVEERQKVHCLNTL
FSMLQINQSIIFCNSVHRVELLAKKITDLGYSCFYIHAKMLQDHRNKVFHDFRNGSCRNL
VCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYK
IEQELGTEIKPIPPHIDQAIYCQ
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcgcgacggaggtattcgccggggactgggaacggaggaggcgacggttacggc
gggggtggctttcaatccaaccataattcccgcggcggttaccgtcagggtaggaaccct
tattaccagtatgggcagcagcactacccttctcagcctcagcagtatggtaaacggagc
ttgcagaatgagccgcaccaacaacagcagcaatggttgcgccggaacgctagtggagct
ccgccggagtcaagttacaatgaggttaggaaaactatccactccgacgggattgattcg
agctctaatgtttggaaggctcgcctaaatattccaccgcctgacactcggtataggact
gaggatgtgactgcaaccaaaggaaatgagtttgaagattacttcttgaagcgtgagcta
ctcatggggatttatgagaagggatttgaaaggccttctcccatccaggaggagagtata
cctattgcactcactgggagtgatattcttgctagagctaaaaatggaactggcaaaaca
gcttccttctgtattcctgcactggaaaaaattgatccagacaacaatgtcattcaagtg
gttatacttgtcccaacaagagagttagcacttcagacatctcaggtttgtaaggaatta
ggcaagcacttgaagatacaggtaatggtcagtacaggaggaacaagtttgaaagatgat
atcatgcgtttgtatcaacctgtccatttacttgttggaactcctggaagaatactcgat
cttgccaaaaggggtgtatgcattttgaaggactgtgcaatgattgctatggatgaggct
gataaacttttatcccccgagtttcaaccttctgtggagcaactaattatgttcctacct
cgacatcgacaaattttgatgttttcagctacatttccagtgactgtcaaggatttcaaa
gacagatatctgcaaaagccttatattattaatctaatggatgagcttacactcaaaggt
ataacacaattttatgcctttgtagaagagcggcagaaggtccactgtctcaataccctt
ttctctatgctgcaaatcaaccaatcaattattttttgcaactctgtgcaccgagtggaa
ctgcttgcaaagaaaatcactgatcttggctattcctgcttctatatccatgcaaagatg
ctgcaagatcatcggaacaaagtctttcatgacttccgcaatggttcctgcaggaatctt
gtttgtactgatttattcacaagaggaatagacattcaagctgtcaatgttgtgattaat
tttgactttcctaagaactcagaaacttatctgcacagggtgggccgttcaggaagattt
gggcatcttggattggctgtaaatttgatcacctatgaagaccggttcaatttgtataaa
attgagcaagaacttgggactgaaattaaaccaattccgccccatatagatcaagctatt
tactgtcagtaa
DBGET
integrated database retrieval system
