Ipomoea nil (Japanese morning glory): 109153101
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Entry
109153101 CDS
T04663
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109153101
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ini03041
]
109153101
Enzymes [BR:
ini01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109153101
Spliceosome [BR:
ini03041
]
Complex C
Other components
Step II factors
109153101
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
Cas3-like_C_2
ABC_tran
nSTAND3
AAA_16
AAA_30
TsaE
T2SSE
PhoH
Flavi_DEAD
SLFN-g3_helicase
Sigma54_activ_2
NB-ARC
DMA
Motif
Other DBs
NCBI-GeneID:
109153101
NCBI-ProteinID:
XP_019156417
LinkDB
All DBs
Position
Un
AA seq
863 aa
AA seq
DB search
MGGWGNIERRIGISGIRMNDVVVPSRRPRPLKRMSSAERWEVKQLMASGVLSVKKCRPMF
DEEDDRMFYEEEEEGAVEIELNEDKPPFLQGQSQSLDMSPVKIFKNPEGCLSRAAALQSA
LVKERREVREQQQRIMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSLSAYDNDMAE
WKKKDGYGKALSFGQRSKLSIQEQRQSLPIYKLKKELVQAVHDNQVLVVIGETGSGKTTQ
MTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVCEEFGCRLGEEVGYAIRFEDCTGPETV
IKYMTDGMLLREILVDESLSQYSVIMLDEAHERTIHTDVLFGLLKQLLKRRPDLRLIVTS
ATLDAEKFSGYFFNSNIFTIPGRTFPVEILYTKQPESDYIDAALITVLQIHLTQPEGDIL
LFLTGQEEIDYACHSLYERIKGLGSKNVPELIILPVYSALPSEMQSRIFEPAPPGKRKVV
VATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGQ
GKCYRLYTETAFYNEMSPTTIPEIQRINLGMTVLNMKAMGINDLLSFDFMDPPSPQALIS
AMDQLFTLGALDEEGLLTKLGRKMAEFPLEPPLSKMLLASVDLGCSDEILTIVAMIQTGN
IFYRPREKQAQADQRRAKFFQPEGDHLTLLAVYEAWKANNFSGPWCFENFVQSRSLRRAQ
DVRKQLHSIMDKCKLDVVSAAKNFTKIKKAIVAGFFFNAARKDPQEGGYRTLVENQPVYI
HPSSALFQRQPDWVIYHELVMTTKQYMREVTVIDPKWLVELAPRFFKVAHPTKLSKRKRQ
ERIEPLYDRYHEPNSWRLSKRRA
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atggggggctggggaaatattgagcggagaattgggatttcagggattcggatgaatgat
gttgttgtcccatcaagaaggccaaggccattgaaaagaatgagttcggcagaaaggtgg
gaggtaaaacaactcatggcttcaggtgtcttaagtgttaagaagtgtcgtcctatgttt
gatgaagaagatgatagaatgttttatgaagaagaagaagaaggtgcggttgagattgag
ttgaatgaagataaaccacctttcttgcaaggccaaagccagagtctggatatgtctcct
gtgaagatttttaaaaatcctgaaggttgtttgagtcgagcagctgcactccaatctgct
ttggtaaaggaaaggagagaagtaagggagcagcaacaaagaatcatgcttgattccatc
cccaaagatctaaacagaccatgggaggatccaatgcctgagacaggtgagaggcatctg
gcccaagaactgaggggtgttggtttatcattgtcagcctatgataatgatatggcagag
tggaagaagaaagatggttatggtaaagcacttagttttggacaaaggtcaaagctttcc
attcaggagcaaagacagagtctacccatttacaagctgaagaaagaattggttcaagct
gtacatgataaccaggttttggttgtgattggagagacaggttcaggcaagacaacccag
atgacacagtatctagctgaggcaggatatactacaagaggtaaaattggatgtactcaa
ccgcgtagagtggctgcaatgtcagtggcgaagagggtttgcgaggagtttggttgtcgg
ttaggggaagaagttggttacgccattcgtttcgaggattgtactggaccagagactgtg
atcaagtatatgacagatggtatgctgttgagagagatactggtggacgagagtttgtct
cagtattctgttataatgcttgatgaagctcatgagagaaccattcatactgatgttctc
tttggtctcttgaagcaattacttaagagaagaccagaccttcggttgatcgtcacatct
gcaactttagatgcagaaaagttttctggatacttttttaactctaacatctttactatc
ccagggagaacctttccagtagagatactttacaccaagcagccagaaagcgactatatt
gatgcagctttgataacagtcttacagattcacttaacacaacctgaaggtgatatcctt
cttttcttgactggtcaggaagagattgattatgcttgccactctctttatgagaggatt
aaaggtctgggtagtaagaatgtccctgaattgattatcttacctgtttatagtgcctta
cctagtgaaatgcagtctagaatcttcgagcctgcccctcctggaaagagaaaagtagtt
gttgctacaaatattgcggaagcttctttaacaatagatggcattttttatgttatagat
ccaggttttgctaagcaaaatgtatataatccaaaacaggggcttgattcattggtcata
acgcctatatcacaagcctcagcgaagcaaagagctgggcgtgctggacgaactggacaa
ggaaagtgttatcgtctttataccgagactgcattttacaatgaaatgtctcctacaaca
atcccagaaattcagcgtattaaccttgggatgacagtgcttaatatgaaagctatgggt
atcaatgatcttttgtcctttgatttcatggatcctccctcccctcaagcactaatatcc
gccatggatcagctcttcactctaggagctcttgacgaagaggggctcttgacaaagttg
ggtaggaaaatggctgaatttcctttggaacctccactgtccaaaatgctcctcgctagt
gtagaccttggatgcagtgatgagattttgaccatcgttgcaatgattcagacgggtaat
attttttatcgacctcgggagaaacaagcacaagctgatcagagaagggcaaagttcttt
cagccagaaggtgatcatctcacactgcttgcggtttatgaagcatggaaagccaacaat
ttttctggaccgtggtgctttgaaaactttgtacaatcacggtctttaaggcgtgctcaa
gatgttagaaaacagctccattccatcatggataagtgcaaactggatgttgtgagtgct
gcaaaaaattttaccaagataaagaaggccatagttgcaggtttctttttcaatgctgct
aggaaggatccacaagaaggagggtatagaacactggttgagaaccagccagtttatata
catcctagtagtgctctattccaaaggcagccagattgggttatttatcacgagcttgtg
atgacaacaaagcaatatatgcgtgaggtcacggtgatcgatcccaagtggcttgtagag
ctggcacccagatttttcaaagtcgctcacccaactaaattaagcaaacgcaagagacag
gagcgcattgaacctctttacgacagatatcacgagcctaattcttggcggttgagtaaa
agacgtgcttaa
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