Ipomoea nil (Japanese morning glory): 109153133
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Entry
109153133 CDS
T04663
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03015
mRNA surveillance pathway
ini03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109153133
09123 Folding, sorting and degradation
03018 RNA degradation
109153133
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ini03019
]
109153133
03041 Spliceosome [BR:
ini03041
]
109153133
Messenger RNA biogenesis [BR:
ini03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
109153133
mRNA cycle factors
Stress granule specific factors
109153133
Spliceosome [BR:
ini03041
]
Complex C
Other components
Complex C specific factors
109153133
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_MUD2_C
RRM_ACIN1
RRM_Nup35
RRM_7
RBD_DEAH11
RRM_RdRP1_2
YflT
RRM_MARF1
RRM_11
HPS3_C
DUF5062
FlgN
Motif
Other DBs
NCBI-GeneID:
109153133
NCBI-ProteinID:
XP_019156464
LinkDB
All DBs
Position
Un
AA seq
671 aa
AA seq
DB search
MAQIQMQHQSPVPAPNGVPAASAVAGAAVSIAAAAPGGAGVASQFTTTSLYVGDLEPTVT
DSQLYDVFNQVGQVVSVRVCRDLSSRRSLGYGYVNYSNPQDAARALEVLNFTPLNGKSVR
VMYSHRDPSLRKSGTANIFIKNLDKSIDNKALFETFSSFGNILSCKIATDANGQSKGYGF
VQFDNEESAQNAIDKLNGMLINDKQVYVGHFLRKQERETSTVKTKFNNVFVKNLSESTTD
DDLNKTFGEFGTITSAVVMRDADGKSKCFGFVNFENADDAARAVEALNGKKFDDKEWYVG
KAQKKSEREQELRSKFEQTVKETVDKYQGANLYVKNLDDSIDDDKLRELFNDYGTITSCK
VMRDPSGISRGSGFVAFSAPEEASRALNEMNAKMIISKPLYVAIAQRKEERKAKLQAQFS
QMRPVAVTPALAPRMPMYPPGAPGIGQQLFYGQAPPAMIPHQAGFGYQQQLVPGMRPGGA
PMPNFFVPLVQQGQQGQCPGGRRGSGPVQQAQQTMPLMQQQMLPRGRMYRFPPGRNVPEV
PVPGVGGGLLSVPYDMGGVALPRDGSLGQPVPITALASALANAPPEQQRTMLGENLYPLV
DQLEHEHAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVQQANSPADQLQLA
SLSLNDTSLVS
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagattcagatgcagcatcagagtccggtgccggcaccgaacggagtgccggcg
gcgagtgctgttgccggcgccgccgtctccatcgctgctgcagctcctggtggtgctggg
gttgcgagccagttcactacgacgtcgttgtatgttggggacctggagccgaccgtgaca
gactcgcagctctatgatgtgttcaaccaggttggtcaggtggtttcggttagagtttgt
cgggacctcagctctcgccgatccctcggctatggatacgtcaactatagcaatcctcag
gatgcggcaagggcactggaggttttgaacttcacaccgctcaacggcaagtcggttagg
gtcatgtattctcatcgtgaccctagtctacgtaagagtgggactgcaaatatatttatc
aagaatttggacaaatcaattgacaacaaagccttgtttgaaactttttcaagctttggc
aacatcctttcatgcaagatagcaactgatgctaacggccagtctaaaggctatggtttt
gttcaatttgacaatgaagaatcggctcaaaatgccatagataagttgaatggcatgcta
attaatgacaagcaagtctatgttggacattttcttcgtaagcaggaaagagaaacttca
actgttaagacaaaatttaacaatgtttttgtgaagaacctatcagaatccacaacagat
gatgatctgaataaaacttttggtgaattcgggacaattactagtgcagtagtgatgagg
gatgcagatggcaagtccaagtgctttgggtttgtcaattttgaaaatgcagatgatgct
gctcgagcagttgaagctttaaatgggaagaaatttgatgacaaagagtggtatgttggg
aaagctcaaaaaaagtcagaaagggagcaagaattaagaagtaaatttgagcagactgta
aaggaaacagtggacaaatatcaaggcgcaaatttgtatgtcaaaaatttggatgatagt
attgatgatgacaagctaagggagctcttcaatgactatggtacaataacatcatgcaag
gttatgcgtgatccgagtggaattagcagaggatcaggatttgttgccttttcagctcct
gaggaagcttccagagctcttaacgagatgaatgcaaaaatgataatcagcaagccactt
tatgttgcaattgctcagcggaaagaagagagaaaggcaaagttgcaggcgcagttttca
cagatgcgaccagttgcagtgacaccagctctcgctcctcgaatgccaatgtatcctcct
ggtgcaccaggtattggccagcagctcttttatggccaagctccacctgctatgattcct
caccaggccggatttggataccagcaacagcttgtccccggaatgcggccaggaggagct
ccaatgccaaatttttttgtgccacttgtccaacagggtcagcaaggccagtgtccaggt
ggcaggcgtggatctggaccagtgcaacaagctcagcagactatgcccttgatgcaacag
cagatgctcccaaggggaaggatgtatcgattcccccctggccggaatgtgccagaggtg
ccagtgcccggtgtgggtggaggtcttctttctgttccatatgatatgggtggtgttgca
cttcctcgagatggttctttgggacaacctgtaccaattaccgcacttgcaagtgccctt
gcaaatgcaccgcccgagcaacagaggacaatgcttggtgagaatttgtacccacttgtt
gatcaactggagcacgagcacgcagcaaaggttacaggcatgcttctcgagatggaccaa
actgaggtcctgcatctgctcgaatcgccagaagctttaaaagccaaagttgcagaggct
atggaagttctgaggaatgttcaacaggctaacagcccagcagaccaacttcaacttgct
tcactttcccttaacgacaccagccttgtgtcctag
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integrated database retrieval system
