Ipomoea nil (Japanese morning glory): 109153792
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Entry
109153792 CDS
T04663
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
109153792
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ini03021
]
109153792
03036 Chromosome and associated proteins [BR:
ini03036
]
109153792
Transcription machinery [BR:
ini03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
109153792
Coactivators
SAGA/TFTC/STAGA complex
109153792
Chromosome and associated proteins [BR:
ini03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
109153792
STAGA complex
109153792
TFTC complex
109153792
SAGA complex
109153792
SLIK complex
109153792
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_EML
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_SCAP
Beta-prop_Vps41
Beta-prop_SPT8
Beta-prop_HPS5
Nbas_N
Beta-prop_WDR35_TULP_N
Beta-prop_IP5PC_F
RAB3GAP2_N
WD_LRWD1
WD40_like
LisH
LisH_PAC1
PALB2_WD40
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
109153792
NCBI-ProteinID:
XP_019157197
LinkDB
All DBs
Position
Un
AA seq
681 aa
AA seq
DB search
MDEDDIEKAVIAYLKKKGFKQTELAFQEEHQKQSKNINNSSSLSNTNSSASSHTDPDIAK
QILSFSQSENVPAKYHEGYSKLRSWADSSLDLYKHELLRVLYPVFLHCFMDLVAKGHIQE
ARAFFNSFREDHEMMHLRDLQKLEAVLSPSHLEEMEFAHFLRQSKVNIKMCQYSYDLLLQ
YLHKAQAIVMLGIINEHINFQVSPGQPSSVSDDAEVVTLIGSGQEAASLINQKEIHWGLL
EDSIEERFEKAGGLLSDSEKVEGESKEGEAEENKIKSVEGGKQGPSLKKLKKDKVGGPTG
KVSHVEGGTTSAAPHVKPELPLPAIPMEVEHSILEDLRNRVQLSSMALPSVNMYTFLNTQ
NGLNCASISHDGSLVAAGFSDSSLKLWDMTKLGQQPGNASLQGDIDSPPSEQVLGTNGQR
RCYTLFHGHCGPVYSASFSPYGDFLLSSSSDSTIRLWSTKLNANLVCYKGHNYPVWDVQF
SPVGHYFASASHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRL
WDVQSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGKIMVWDLASGRCITPLVGHASC
VWTLAFSCEGSLLASGSADCTVKLWDVTTSTKMPKSEENKSGSTNRLRSLKTLPTKSTPL
YALRFSRRNLLFAAGAFSKSA
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagacgacattgagaaagcggtgatagcgtatctgaaaaagaagggtttcaag
caaacggagcttgctttccaggaggagcatcagaaacagagcaaaaacatcaacaactct
tcctctctatccaacacgaactcctcagccagttctcacactgacccagatattgccaag
caaattctctctttctcacagtctgaaaacgttcctgcaaagtatcatgaggggtacagc
aagcttcgatcttgggcagatagttctctcgatttgtataagcatgaattgcttcgtgtc
ttgtaccctgtatttctccactgtttcatggatcttgtggctaaaggtcatattcaggaa
gcccgagcctttttcaatagcttccgggaagaccatgagatgatgcacttacgtgatctc
cagaaactagaagctgttctgtcaccatcacatctagaggaaatggaatttgcacatttt
ttacggcaaagcaaagtgaacataaaaatgtgccagtattcctatgaccttttgctgcaa
tacttgcacaaggcacaggccattgtgatgcttgggattatcaatgagcatataaacttt
caagtttctcctggacagccaagttcagtttcagatgatgctgaagttgtaactcttatt
gggagtggccaagaagctgctagtttaataaatcagaaagaaattcattggggattgctt
gaagattccatagaagagcggtttgagaaggcaggaggtctgctttcagattcagagaag
gttgaaggagaatctaaagaaggagaagcagaagaaaacaagataaaatcagttgaagga
ggaaagcaaggcccttctctgaaaaagctgaaaaaggacaaggttggaggtcctacaggg
aaagtttctcacgtagaggggggcacaacatctgctgcaccacatgttaaaccagagtta
cctttgccagcaatacccatggaggtagaacactctattcttgaagacttgaggaaccgt
gtgcagctgagtagcatggcattgccatctgtgaacatgtatacctttctcaatactcaa
aatggactaaactgtgcatcaatatctcatgatggatcactggtggctgctgggttctcg
gattcttcattaaagttgtgggatatgacaaagcttggacaacaacctgggaatgcttcc
ttgcagggtgatattgattcccctccaagtgagcaggtgcttggcacaaatggacaacga
agatgttatacattatttcatggtcattgtggacctgtttattctgcatccttcagtcct
tatggtgattttctcctatcgtcatcatcagattcaaccattcggttatggagcacgaag
ttaaatgcaaatcttgtttgctataagggccataattatcctgtatgggatgttcagttt
agtcctgttgggcattactttgccagtgcttcacatgatcgaacagcaaggatctggtca
atggacagaatacagcctctgaggataatggctggtcacttatctgatgttgattgtgtg
caatggcatgcaaactgcaactacattgcaactggatcaagtgacaaaactgttcggttg
tgggatgtccagagtggcgagtgtgtcagaattttcattggccataggagtatgatattg
tcgttggcgatgtcacctgatggtcgttatatggcatcaggtgatgaagatggaaaaatc
atggtgtgggatcttgcaagtggtcgttgtattacccctttggttggtcacgcctcttgc
gtatggacacttgctttcagctgtgaaggttctcttcttgcatctggttctgctgattgc
actgtgaaattatgggatgtaaccacgagtactaagatgccaaaatctgaagagaataaa
tctggaagtaccaataggcttcgatcattgaagactctccctactaaatccactccatta
tatgctttgcggttttctcgaagaaatcttctctttgctgctggcgctttctcaaaaagt
gcataa
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