Ipomoea nil (Japanese morning glory): 109156076
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Entry
109156076 CDS
T04663
Name
(RefSeq) replication factor C subunit 5-like
KO
K10756
replication factor C subunit 3/5
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03030
DNA replication
ini03410
Base excision repair
ini03420
Nucleotide excision repair
ini03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
109156076
03410 Base excision repair
109156076
03420 Nucleotide excision repair
109156076
03430 Mismatch repair
109156076
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ini03032
]
109156076
03036 Chromosome and associated proteins [BR:
ini03036
]
109156076
03400 DNA repair and recombination proteins [BR:
ini03400
]
109156076
DNA replication proteins [BR:
ini03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
109156076
DNA Replication Termination Factors
ELG1-RFC complex
109156076
Chromosome and associated proteins [BR:
ini03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
109156076
DNA repair and recombination proteins [BR:
ini03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
109156076
Check point factors
HRAD17(Rad24)-RFC complex
109156076
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RCF1-5-like_lid
RFC_C
DNA_pol3_delta2
Mst1_SARAH
EnY2
COMPASS-Shg1
Motif
Other DBs
NCBI-GeneID:
109156076
NCBI-ProteinID:
XP_019159441
LinkDB
All DBs
Position
Un
AA seq
716 aa
AA seq
DB search
MSSPSIPRCKSVPSIPDAGKHSPSSSDITAASFKTSKSAESIASTLQKITRKKWISSSSS
SKNSNLTVENMKEFDRRNEIREGKREPSSPYYRGLTNQKIGIEKQKLAESSPLRESFSVA
MTMSSSFVKIQEWRNSRFVAKGKEDRTACNQETKVKSRRTGNEQEKNHGHNSRTDLYTLF
SKEKPMREKVSETTQSRSTKTRKEQGKKQEIHHSSRTGLHEKSLRERVSEQPPPLPQPPI
IAPSLPQHPPEPLPSSRLSLPSPPPTPLVQPSEQDKESSPPPAQGKSIAEVEENEIKFIW
ADKHRPQSLKDFLCNKNMALELQAMVQISTSRDHQFIITMINGGFYPSFNGSKPFFFFFL
QAKNCCDEHFIFEGPPGVGKRTMIFALLREVFGPDKVQAREERQVLSLKGESVPSIKVNV
KVSMRHIEINLSETKGYEQHVIVELIRGKSSKLSGIPLPCNQEDYKAIIICEAEKLSTDS
LLYIKWILEKYKGCYKVFFCCSDASKLQPIKSTCKVVQLHSPSNEEIINVLEFIAEQEGV
ELPHPLAEKFANSAKRNLRQAIRSFEATWHHNSLLKEDQEIMNGWEDDIAKIARNIIEEQ
SPRQLYEIRRKLQNLIEHNVSAEFIFYTLGEELKKNLDKQLQNDIDNLQQKYKSQLNGEE
SGNIHNDPLRQTVQQFMKIEGERSIFHTVLDSTIIESILHVYRMIRLLFLSPMQNS
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagtccctcaatcccgcgatgcaaatccgttcccagcatcccagatgctggtaaa
cactccccctcgagctcggacataactgcagcttcattcaagacctcaaagtcggccgag
tctatcgcctcgaccctccagaagatcacaagaaagaaatggatatcatcatcatcttct
tccaagaactccaatctgacagtggagaacatgaaggagtttgacagaagaaatgagatt
agagagggaaagagagagccttccagcccttattacagagggctcacaaaccaaaagatt
ggcattgagaaacagaagctggcagaatcaagtcccctcagagaatctttctcagtggct
atgactatgagttccagttttgttaagattcaggagtggcgaaactcgaggttcgtggcc
aagggaaaggaagatagaactgcctgcaaccaggaaacaaaagttaagagcagaagaaca
ggaaacgaacaagaaaagaatcatggtcacaattctaggactgatctttacactttgttc
agtaaagagaagcccatgagggagaaagtatcagaaacaacacaatcccggagcacaaaa
actcgaaaagaacaaggtaaaaaacaggagattcaccacagttccaggacaggccttcac
gagaagtccttgagggagagagtatcagaacagccaccaccactgccccagccgccaatc
atcgccccatcactgccccaacacccgcccgagccattgccctcctcacgcctatcactg
ccatctccaccaccaacgccactcgtgcagccatccgagcaagacaaagaatcatctcca
cctccagctcagggaaaatctattgcagaagtggaagaaaatgaaattaagttcatctgg
gcagataagcacagaccacaatctctgaaagatttcctgtgcaataaaaatatggcactc
gagctacaagccatggtacaaatatcaacttcccgagatcatcaattcatcatcaccatg
ataaatggaggattctatccctcttttaatggatccaaaccttttttttttttttttttg
caggcaaaaaactgttgtgatgaacatttcatatttgaagggccacccggagtgggaaag
agaacaatgatttttgcactgcttcgcgaagtttttggcccagataaagtacaggctaga
gaggaacgccaggtattgtctttaaagggtgaatcagtgccaagcatcaaagtaaacgta
aaggtatcaatgaggcacatcgagatcaatctctccgaaactaaaggctatgagcagcat
gtgattgttgaacttatcagagggaaaagtagcaagctctccggtataccactcccgtgc
aatcaagaagactataaagcaatcataatatgcgaggcagaaaagctatcaacagattca
ctgctttatatcaaatggatattggagaagtataaaggctgttataaagtgttcttttgt
tgcagtgatgcatcgaaactccagcctataaagtcgacctgcaaagttgttcaacttcac
tcaccttcgaacgaagagattatcaatgttttggaattcatagctgaacaggaaggagtc
gagctcccacacccactcgcagaaaaatttgccaacagtgcaaaaagaaatttaagacag
gccatacgatcattcgaagcaacctggcaccacaattctttgctgaaggaagatcaagaa
atcatgaatgggtgggaggatgatatagcaaagattgccagaaatataatcgaagagcaa
agcccaagacagctttatgaaatccgcaggaaacttcagaatctgatagagcacaatgtt
tctgcagagttcatcttttatactctgggagaagagctaaagaagaacttggacaagcag
ttacagaacgacatagacaatctacagcagaaatacaaaagccagttgaacggtgaggaa
tcgggtaacatacataatgatccattacgacagactgttcagcagtttatgaagattgaa
ggtgagagaagtattttccataccgtattagactcaacgatcatcgagtcaatcctccat
gtttatcgtatgattcgtcttctctttctttctccaatgcagaattcatag
DBGET
integrated database retrieval system
