Ipomoea nil (Japanese morning glory): 109157649
Help
Entry
109157649 CDS
T04663
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109157649
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ini03019
]
109157649
Messenger RNA biogenesis [BR:
ini03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109157649
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109157649
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
109157649
NCBI-ProteinID:
XP_019161048
LinkDB
All DBs
Position
Un
AA seq
2413 aa
AA seq
DB search
MIPFASTTSSQIRYLLQSLKDSNSDSVFQELCQFATYGIEGRILLLGTIFDHLSIYGKDL
KNMQFDAVYASIFKYILDKPSFSTVFCVSIRGVTINEEFLENLCNALRLSVSEKIEVGLA
LSDSENADVKMCGKSYCMGQIVELCSNQMSFDSVEHIQSILLLINQSEGLSKHVDLFMHM
LSLVQSKGGSQFILSPLLSDELREVNFWRNFDDFNEESEDDFDALLMEMEKEMSMADTMK
ELGYGCTANALQCKEILSLFLPLTEITVARILGMIVRTYSGLEDNQNIFSTFRAALGSTT
VYDLPSPSSWNGDVLIDAIKELAPGLNWGTVMKNLDHEGFYVLNEPAFAFLMSMYKCACQ
DPFPLQAVCGSIWKNSEGQLSFLSHAVVAPPEVFTFAHSGRQMAYVDAVNDHKFQHGHSN
HAWLCLDLLEVLCQLAERGHANSVRSILEHPLTHCPELLLLGLSHINTVYNLLQHEISST
VFPMILRNAPGMGMIHYLWHVNPSILVRGFVDAVTIDADNISRVLEACQELKILSPVLDM
LPSNVGIRLAAVASMKGLIDLDKWLNTNLSTYKDKFYEECLKFLKEVQLGVQDISTNCFH
LPNTLLNIYMEASTMFIKLLQSHTGLISSHYLSDELEKINMTYVNSNPRLKTVGASNSST
SDAHADDIEAEVNSYFQQMFHEERSVESIIQMLARFKESSDKREQAVFEFMIANLFEEYK
FFSKYPDKQLTIAAVLFGSLIKHQLVTHLTLGIALRAVLDALRKPADSKMFSFGTKALDQ
FRERLIEWPQYCNHILQISHLRVNHLDIVLYIERALARISSAHSESDIGNNAVADQFHGI
IQSSTSNVESSTFALTGPISSQPSGLQLAPPVQLPPRQQSTLDERKISTIPSHMKTLSST
SQAVGVPSSDASNIPKSQSALNSAAAHTSSPGFTRPNRTNSTRFGSALNIETLVAAAERR
ETPIEAPASEVQDKVSFIINNLAIQNVDAKAKEFSEILKEQYYPWFAQYMVMKRASIEQN
FHDLYLKFLDKVNSKALYKEVVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKITI
GRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMGILGLL
AEIYAMPNLKMNLKFDIEVLFKNLGVDLKDVAPTSLLKDRVREVEGNPDFSNKDAGSSQS
QIVTDVKSGLVSTLNQVELPLEAATSSHPGGHSRILSQYAAPLHLPSATLMEEEKLVALV
DQHQIPSGQGIIPGQTPFSVSQLPTPTSNIEQQVIINPRLRALGMHVHFQSVLPIAMDRA
IKEIVTSIVHRSVSIATQTTKELVLKDYAMESDETRIRNAAHLMVASLAGSLAHVTCKEP
LRGSISSQLRSTLQGLSISSELLEQAVQLVTNDNLDLGCALIEQAATEKAIQTIDETIAQ
QLAIRKHRDGPTFFDSGVYTPGHMGVLPEALRPKPGRLSHSQQRVYEDFVRLPLQNQSGQ
SSNTLPVGPSPSPSSSGLSRAYVAGSGQMNPAIYSAGLVNAGISSVPQPLDIVSEEIDTS
SSQLHSASSPNNGMGDGGFENETIAPLSSASTAELQPVEQSNVVKEPGLSVQPPNSTPTS
ERHGSSISEPLLNTGDALDKYQIVSEKLENLVSTDAKEAEIQGIIAEVPAIILRCISRDE
AALAVAQKVFKGLYENASNTVRVNAHLAILAAIRDVSKLVVKELTSWVTYSDEERKFNKD
ITVGLIRSELLNLAEYNVHMAKLIDAGRNKPATEFAISLIQTLVMSDSRVISELQNLLDA
LAKLAARPGSPESLRQLVEIAKNPSVNASALSGFTSGKEDNMKQQPKDKKASVLLQAGRD
DTGSDSVEPDPAGFREQVSMLFAEWYRICELPGASESAYAHYVIQLHQSGLLKGDDASDR
FFRLLMELSVSHCLSSEVISSGPSQSHLVPLSFLAIDIYAKLVYSVLKFYPVDQGVSKLS
LLPKVLAVTVKFIQKDSEEKKISFNPRPYFRLFINWLLDFCSLEPVFDGANFQVLTALAN
AFHALQPLKVPGFSFAWLELVSHRSFMPKLLTANAQKGWPYFQRLLVDLFQFMEPFLRNA
ELGEAVHFLYKGTLRVLLVLLHDYPEFLCDYHFSFCDVIPPSCIQMRNIILSAFPRNMRL
PDPSTPNLKIDLLAEISQSPRILSEVDAALKTKQIKSDIDEYLKTRQQGSLFLTELKQKV
LLSPTESARAGTRYNVPLINSLVLYVGMLAIQQLQARTAAHSQSMASSGVSYPVYLVGAA
LDIFQSFIMDLDTEGRYLFLNAVANQLRYPNNHTHYFSFILLYLFSESNQEVIQEQITRV
LLERLIVNRPHPWGLLITFIELIKNPRYNFWSRSFTRCAPEIEKLFESVSRSCGGPKPVD
DSVVSGGIPDNMH
NT seq
7242 nt
NT seq
+upstream
nt +downstream
nt
atgattccgttcgcttcgaccacttcgtcccagattcggtatttgctgcagagcttaaag
gattccaactctgactcggtcttccaggagctctgccagtttgcaacatatggaattgag
ggaagaatactgctgcttggaaccatctttgatcacctgagtatttatggaaaagacctg
aagaatatgcaattcgatgcagtttatgcttcaattttcaagtatatcttggataaaccc
agtttcagcactgttttctgtgtgtccataagaggtgttacaattaatgaggagttcctg
gaaaatctgtgtaatgcattacgcttgtcagtatctgagaaaattgaagttggtcttgct
ttgtctgattctgagaatgctgatgtaaaaatgtgtgggaaaagctactgcatgggtcag
attgtggaattatgttcaaatcaaatgtcttttgattctgtggaacacattcagagcatt
ctattgttgattaatcaatctgaaggcctttctaagcatgtagatttgtttatgcacatg
ctctctcttgtccaatcaaaaggaggatcccaattcattttatccccattgctttctgat
gaacttcgtgaagtcaacttttggaggaactttgatgattttaatgaagaaagtgaagat
gattttgatgcgcttttaatggaaatggaaaaggaaatgagcatggctgatacaatgaag
gagttgggttatggatgcacagctaatgccttgcaatgcaaggaaatcttatctcttttc
ttaccattgactgaaattactgttgcaaggatacttggaatgattgttcgtacctactcc
ggtctggaggataatcagaatatattttcaacattccgagctgctcttgggagtaccact
gtgtatgatttaccatcaccaagttcttggaatggtgatgtacttattgatgcaatcaag
gagctagcacctgggctaaattggggtactgttatgaaaaatctagatcatgaagggttt
tatgtccttaatgaaccagcttttgcctttcttatgtccatgtataaatgtgcatgccag
gatcccttccctctacaagctgtctgtggctctatctggaaaaattctgaggggcagtta
tcatttcttagtcatgctgtagtggctcctccagaagtatttacctttgctcattctggg
aggcaaatggcctatgttgatgccgtgaatgaccataagtttcaacatggacattcaaac
catgcttggttgtgtcttgatcttctggaagtgttgtgccagcttgctgagaggggacat
gcaaattctgttcgatccattcttgagcaccctcttacgcactgccccgaacttttactt
cttggcttgtcacacatcaatacggtgtataatctccttcagcatgaaatttcttcaaca
gttttccctatgatactgagaaatgctccagggatgggtatgattcattatttatggcat
gtcaatccaagcattttggttaggggttttgtggatgctgtaacaattgatgcggacaat
attagcagagttttggaggcctgccaagaattaaagattctttcaccagtattggatatg
cttccttccaatgttggtattagacttgctgctgtagcctctatgaaaggactcatagat
cttgataaatggttgaataccaacttaagtacatataaagataagttttatgaggaatgc
ctaaagtttctaaaggaggttcagcttggcgttcaagatatttcaactaactgctttcat
ctccctaacacactgttgaatatttatatggaagcttctaccatgttcattaagctgctt
cagtctcatactgggttaatttcctctcattacttatctgacgaattggagaagataaat
atgacatacgtgaattctaacccaaggcttaagactgttggtgcttctaattcgtcaact
tcagatgctcatgctgatgacattgaagcagaagtaaactcatatttccaacaaatgttt
catgaggaacgctcggttgagtcaattattcaaatgcttgctcgcttcaaagaatcttct
gataaaagggaacaagcagtttttgagtttatgattgctaatctttttgaggaatataaa
ttcttctcaaaatatcctgacaaacagcttaccattgctgcagttctgtttggatccctt
atcaagcatcagcttgtaactcatcttactcttggaattgccttgcgggccgtcttggat
gctttgcgaaaacctgctgattcaaaaatgttttcttttggcactaaggctctggatcag
tttcgggaacgtttgattgagtggccacaatactgcaatcacatcttacaaatatctcat
ctccgtgtaaatcatttggatattgttctatacattgaacgggcacttgcaagaatatcc
tctgcacattctgagtctgacataggcaataatgctgttgctgatcagtttcatggaatt
atccagtcttcaacatcaaatgtggagagttccacatttgcattgactggacctattagc
tcccaaccatcaggcttgcaattagcacctccagttcagctcccgccgagacagcagagt
accttagatgagaggaaaatttcaactattcctagccacatgaaaactttgtcctccaca
agtcaagcagtgggtgttccttcaagtgatgcatctaatattccaaagtcacagagtgca
ctcaattctgcagcagcgcacacttcatcccccggttttactcgcccaaatcgaacaaac
tcaacaaggtttgggtcagcattaaatattgaaacacttgttgctgctgctgagagaaga
gaaacacctatagaggctccagcttcagaagtccaggataaagtctcatttatcatcaat
aatttggctattcaaaatgttgatgctaaagcaaaagagttttctgaaattttaaaagag
cagtactacccctggtttgctcagtatatggtgatgaaaagagcgagtattgagcaaaat
tttcatgacttatacttgaagttcctagacaaggtgaattcaaaggctctgtacaaggaa
gttgtccaagcaacgtatgaaaactgcaaggtcctgttaggatctgaacttataaagtcg
agttcggaagagcgttcattgctaaaaaatctaggaagttggctagggaagataacaatt
ggcaggaatcaagttttacgtgctagggagattgatcccaagtctttgatcatagaggct
tatgaaaaagggctaatgattgcagttattccgttcacctcaaagatattggaaccatgt
caaagcagtctagcataccaacctcctaatccgtggaccatgggtatacttggattactt
gctgagatatatgcaatgccaaacttaaaaatgaacctcaagtttgatattgaggtgctg
ttcaaaaaccttggtgtggatttgaaggatgttgcaccaacatcacttcttaaagacagg
gttagagaagtagaaggaaatcctgatttctcaaataaagatgctgggtcttctcaatcc
cagattgttaccgatgtcaaatcaggacttgtgtctactcttaatcaggttgaactacca
cttgaagctgccacatcatctcatcctggtggtcactcacgtatattatctcagtatgct
gctccactccatcttccttctgcaacacttatggaggaagagaagctagtagctttagta
gatcagcatcaaattccttctggtcaaggtatcataccagggcagacaccgttttctgtt
agtcagcttcctacacctacctctaatattgaacagcaagttatcatcaacccaagactt
cgtgctctgggcatgcatgtgcattttcaaagtgtgcttcccattgccatggatagagct
ataaaagagatagttaccagcattgtgcaccgcagtgtttctatagctactcagacaacg
aaggaacttgttttgaaggactatgccatggagtcagatgagacccgtatacgtaatgct
gcacatctgatggttgctagtttagcaggaagtctagctcatgtgacatgcaaggaacct
ttacgtggttcaatatcgagccagctacggagtacacttcagggattaagtatttctagt
gagctccttgaacaagctgtacaactagtgactaatgacaaccttgaccttggttgtgcg
ttgattgagcaagctgcaacagagaaggcaatacaaactattgatgaaaccattgctcaa
cagcttgctataaggaagcatagagacggacccacattctttgattcaggtgtctatact
ccaggacacatgggagttttacctgaagcacttcgtcctaaacctggccgtttatcccat
tctcaacagcgagtttatgaggattttgttcgcttacctctgcaaaatcaatcgggacaa
agctcaaatactttgcctgttggtccttctccttcaccaagtagcagtggtctgtctcgg
gcttatgtggctggctctgggcaaatgaaccctgcaatttactcggctggccttgttaat
gcaggaattagttctgttccacagcctttggatattgtatcagaagaaatagatacaagt
tcatctcagcttcatagtgcttcctcacctaacaatggaatgggtgatggcggttttgaa
aatgaaactattgctccattatcttcagcatctacagctgaattgcagcctgttgaacag
tctaatgttgtaaaggagccaggtctctctgtacagccaccaaattcaacaccaacctct
gagcgtcatggaagtagtatttcagagccacttttgaacacaggcgatgctctggataaa
taccagattgtttcagagaagcttgaaaatctggtatctactgacgctaaagaagcagaa
attcagggtattattgcggaagttcctgcaataattctcaggtgcattagtcgagatgag
gcagccttggcagtggctcaaaaggtgttcaagggattgtatgagaatgcgtcaaatact
gtgcgtgtaaatgctcatcttgctattctggcggctatccgcgatgtcagcaagcttgtt
gttaaggagttgactagttgggtgacttactctgatgaggagcggaagttcaacaaagac
attactgttggtctgatacggagcgaactactgaacctagccgagtacaatgttcatatg
gcaaaacttattgatgcaggaagaaataagcctgcaactgagtttgccatatctctcata
caaactttggtgatgagtgattccagagtcatatctgagctacaaaatcttctggatgca
cttgcaaagcttgctgctaggcctggttctcctgagtcattacggcagctggttgagata
gctaaaaatccttctgttaatgcttctgctttgtctggttttacgagcgggaaggaggat
aatatgaaacaacaacctaaagacaaaaaggcttctgtgcttcttcaagctggtagagat
gacacaggctctgattctgttgagcctgaccctgctggatttcgtgaacaggtctccatg
ctgtttgctgaatggtaccgaatatgtgaacttcctggagcaagtgagtctgcatatgca
cactatgttatacaactacaccaaagtggcctattaaaaggggatgatgcatcagatcgt
tttttccgcctgctcatggaactttctgtatcacactgcttatcatctgaggttattagt
tcaggtccttctcagtcacatctagtacctctgtcattccttgctattgatatctatgcc
aaactggtgtattctgttttgaagttttatcctgtggatcaaggagtcagtaaactttct
cttttgcctaaggtccttgctgtaacagtaaagtttatccagaaagattcagaagagaag
aagatatcctttaatcccagaccatatttcaggctatttattaattggctcttggatttc
tgttcattagaacctgtttttgacggtgcaaactttcaggttttgactgctttagcaaat
gctttccatgctcttcaacccctcaaggttccaggattcagctttgcatggctcgagctt
gttagtcataggagtttcatgccaaaattactcactgcaaatgctcagaaagggtggcct
tattttcagcggttattggtggatcttttccagttcatggagccatttctgaggaatgct
gaacttggagaagcggttcatttcctatataaagggacgctcagggtgttgttggttctt
ctgcatgactatccagagttcctttgtgactatcatttcagcttctgtgatgttatccct
ccgagctgcatacagatgcgaaatattattcttagtgcattccctcgcaacatgaggcta
cctgatccttccactcccaacttaaagattgatctacttgcagagatcagtcaatcccca
cgcattctttccgaggttgatgctgctcttaaaacaaagcagataaagagtgatatagat
gaatacttgaagacaaggcaacaggggtctctgtttcttactgagttgaagcaaaaagtg
ttactctctcccactgagtctgcccgtgctgggactcgttataatgtccctctcataaac
tcccttgtactttatgttgggatgctggctatacagcagctgcaggcaagaacagctgct
cattcacagtcgatggcaagtagtggtgtttcatatcctgtttatttggtgggtgctgct
ctggatatatttcagtcatttataatggacttggatactgaggggcgttacctcttcttg
aacgctgttgctaaccaattgcgttatccaaacaaccacacgcattacttctccttcatt
ctcctctacctcttttcagaatcaaatcaggaagtaatccaagaacagatcacgagagtc
ctattggagcgcctaattgtcaaccgacctcatccatggggacttcttatcactttcatc
gagctcataaagaatcctcgatataacttctggagcagatcatttactaggtgcgcacct
gaaatcgagaaactttttgaatcagtttcgaggtcatgtgggggccctaagccagtagat
gacagtgtggtttctggtgggattcccgacaacatgcactaa
DBGET
integrated database retrieval system
