Ipomoea nil (Japanese morning glory): 109159142
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Entry
109159142 CDS
T04663
Name
(RefSeq) uncharacterized LOC109159142
KO
K06100
symplekin
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109159142
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ini03021
]
109159142
03019 Messenger RNA biogenesis [BR:
ini03019
]
109159142
Transcription machinery [BR:
ini03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109159142
Messenger RNA biogenesis [BR:
ini03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
109159142
U7-dependent histone pre-mRNA processing factors
109159142
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_EZ
HEAT_2
SRA
Motif
Other DBs
NCBI-GeneID:
109159142
NCBI-ProteinID:
XP_019162717
LinkDB
All DBs
Position
Un
AA seq
1333 aa
AA seq
DB search
MVGMMAAVSREKVADLLNSSKLAAAVPSKMGYLRRLKDEVSDADSILLTEFLPLLLDFVS
DRFSPVRKFTIEMLSPIGIRHIEFLPAIIPLLITALKDDTPAVARQSITCGIEIFRSMLF
KVAIQGLYSSELDDSLETSWAWVQKFMYEICTVAFQKHCCQPALDGRSLLAIKFVESVIL
LYTPNPNVSSEPPSDINAQGNFEEFNISWLRGGHPILKVGELSAKASNSLSSLLNQLRFP
AVKSLSNLMIIVLINSLSAIATKRPAFYGRILPVLMGLDPSTSDGNDKHVYAVHHALKNA
FLSCLNCTHPGSAPWRDRLIDALKEMKPGVRTDRGGHQVSQANGKVEPKNELCASEDAKP
SIKTMDAGCNIAGAKRPVIEINDNSVDVDGEMSRKRVKSTPAVLEGKEELSGQQDNSLSE
PTTSRTDSDNSAVQQLVAMFGSLVAQGEKAQSLLEMLISSISGDLLAEVVMANMRNVPPN
RPNAEEDDELLMAGSHLGASTIGTGLKQLSLLLTDNLSQPSTLQQNDIPVDAQFSLSSEL
EQSGGGEEQPLNLPQIKAASDSQDYSSDQAPKPVSFSEGTPIVENIPVIAPEVADVGNMG
NAIPGIDSFSQNDGSAGVVVPLPSSTDLDEASQEHVSGLARSDLEALPSISTDRSEELSP
KAAVTDATNIQASTATSVEPSPQLVLPKMSAPVVHLSDEQRDNLQKSVLVRVIDAYKQVA
VAGGSHARLSILAHLAVKLPSELDAWKMLQVHILSDYVNHEGHELTLRVLYRLYGQAEED
QDFFSSTAAASAYEMFLLTVAETLRDSFPASDKSLSRLLGDAPHLPNSIFKLLECLCCPG
SSDNDDKELYSGDRVTQGLSAVWSLILLRPPFRNTSLNIALQSAAHHLEEVRMKAIRLVA
NRLFPLPSISQQIETFANEMLLSVINVNQNTNSNDDGTNTELQQDSNLDRSLNDQPSTSA
ATKEMSSDTHQSSTSESISSSSVAEAQRCMSLYFALCTKKHSLFRHIFITYKSGSKAVKQ
AIDGQIPMLVRTIGSSPELLEIISDPPNGSEELMIQVLRTLTEGTVPSPELIALVKQLYE
TKVKDVEILLPVLPFLSKEEVLRIFPHLVNAPLDIFQAALSRVLEGSSHSGPMLTPAEAL
IAIHGIDPDRDHIPLKKVTDACNACFDQRQIFTQQVLAKVLNQLVEQIPLPLLFMRTVLQ
AIVAFPSLVDFIMEILSRLVSKQIWKYPKLWVGFVKCAQLTKPQSFSVLLQLPPAQLENA
LNKVSALKAPLVAHASQPHIKSSLPRSVLVVLGIASDSQSSSQAQPPQPPTDDKESSDKE
AVTEVSKESSAAS
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
atggtcggaatgatggcggcagtttccagagagaaagtagcggatcttctgaactcctcc
aagcttgctgcagccgttccatcaaagatgggctacttgcgccggctcaaggatgaggta
tccgacgccgactccatcttgctcacggagttcctccctcttctcctcgacttcgtctcc
gatcgatttagtccagttcgcaaattcacaatagagatgctcagtcctattgggatcaga
catattgaattcctacctgcaatcatacctttattgatcactgcccttaaggatgacaca
cctgctgttgctagacagtctattacatgtggaattgagatatttcgtagtatgctgttc
aaagttgccattcagggattgtattcaagtgaattggatgattcgcttgaaacatcttgg
gcatgggtgcagaagtttatgtatgaaatatgtactgtggcatttcagaaacattgttgt
cagccagcacttgatggaagaagtttactagcaataaagtttgtggaatctgtcattcta
ctttatacgcccaatcccaatgtcagctcagagccaccttctgatataaatgctcaagga
aattttgaggaatttaatatatcatggcttcgtggaggtcatccaatacttaaagttgga
gagttgtcagcaaaagcaagtaatagtttgagctcactgcttaaccaattaaggtttcca
gcagtgaagtcactaagtaacttgatgatcattgtgctcatcaatagcctttcagcaatt
gctacaaaaaggccagctttctatggtcgtattctaccagttttaatgggtctagatcct
tcaacctctgatggcaatgataagcatgtttatgctgtgcatcatgctctgaagaatgca
ttcctctcttgcttgaattgtacccaccctggttctgctccgtggagggatcgattaatt
gatgctctaaaagaaatgaaacccggagtacggacagatcgaggtggacaccaggtttcc
caggccaatgggaaagttgagccaaagaatgaattatgtgcctcggaggatgcaaaacca
tcaattaaaacaatggatgctggttgtaacattgctggggcaaaaagacccgtgattgaa
attaatgataattcagttgatgttgatggtgaaatgtctcgaaaacgtgtaaaatcaacc
cctgctgtcttagaagggaaggaggagttaagtgggcaacaggataattctttgagtgaa
ccaaccacatctagaacagatagtgataacagtgccgtgcagcaacttgttgcaatgttt
ggttcattagttgcacagggtgaaaaggcccagtcattactagaaatgcttatctctagt
atatcaggtgacttgctagctgaagtagtgatggcaaacatgcgaaatgtcccaccaaat
cggccaaatgcggaagaggatgatgaacttctcatggcaggctcacatcttggtgctagc
acgattggtactggcttaaaacaattgtcattattgttgactgataacctttcacaacca
agcacattgcaacagaatgatattcctgtggatgctcaattttcgttatccagtgagctt
gagcaatctggaggaggggaggagcaacctttgaatttgcctcagattaaggcagcatct
gattcccaagattattcaagtgatcaagcaccgaaacctgtttctttttctgaaggtact
cctattgtggagaatattccagtgattgcacctgaagttgcagatgttgggaatatgggg
aatgctatacctggcatagattctttttctcagaatgatggatcagcaggcgtggttgtt
ccattgccatcttccactgaccttgacgaggccagtcaagagcatgtttctggtttagct
aggtcagatttagaagctcttccgtctatttcaacagataggtctgaggaacttagccca
aaagcagcagtgacagatgctaccaacatccaggcctccacagcaacttcggttgaaccg
tctccgcagttggtgcttccaaagatgtctgcacctgttgttcatctatctgatgaacaa
agagacaatttgcaaaagtcagttttggtgcgtgttattgatgcttacaagcaagtagcg
gtagcaggaggctctcatgctcgtttgtctattcttgcccatctagcagttaagcttccc
tcggagctagatgcatggaaaatgctacaggtgcacatactgtcagattatgtgaatcat
gaggggcacgagttgacattacgcgtcctctacaggttatatggccaagcagaggaagac
caggactttttctcttcaacggctgctgcatctgcatatgaaatgttccttcttacagtg
gcggaaacacttagggattcttttccagcctctgataaatctttaagtagattgcttggt
gatgctcctcatctaccgaactctattttcaaattgttagagtgtttgtgttgtcctggt
agtagtgataatgatgacaaggagttatacagtggagatcgagtaacacaaggcctcagt
gcagtgtggagcctaattttgttgagacctccttttcgaaacacatcccttaatattgct
ctgcagagtgctgcacatcacctggaagaagtgcgtatgaaggcaatacgactggttgca
aacaggctttttcctctaccttctatctctcaacaaatagaaacttttgcaaatgaaatg
ctattatcagtcataaatgtcaatcagaacacaaattcaaatgatgatggtactaatacc
gaattacagcaggattctaatttggatagaagtttaaatgatcagccatctactagtgct
gccacaaaagaaatgtcctccgacacacatcagtcatccacttctgaaagcatatcttct
tcttcagtagctgaagctcagcgttgcatgtcattgtattttgcactgtgtacaaagaag
cactccctttttcggcatatattcatcacttataaaagtggatccaaggcagtcaaacag
gcaattgatggccaaatcccaatgcttgtccggaccattggctcatcacctgagcttctt
gaaatcatatctgatccgccaaatggtagtgaggaacttatgattcaggttctgcgtacc
ttgactgaggggacagtaccttctcctgaattaatagctttagttaagcagttatatgag
acaaaagtgaaggatgtagaaattcttcttccagtgctgccattcctgtcaaaagaagag
gtcctgcggattttcccacatcttgttaatgcaccattagatatattccaagcagctctt
tctcgtgttctagagggatcatctcattctggtccaatgctgactccagcagaagcttta
attgctatccatggaattgatcctgatagagatcacattcccttgaagaaggtgacggat
gcttgtaatgcttgctttgaccagcgacaaatctttactcagcaagttcttgccaaagtg
ttgaatcaactggttgaacaaattcctcttccattattatttatgagaacagtattacag
gcgattgttgctttcccttccctggttgactttataatggagatcctctctcgtcttgta
agcaaacagatatggaaataccctaagttatgggtaggatttgtgaaatgtgcccagttg
acgaagccacaatctttcagtgttctacttcagctacctcccgcacagcttgaaaatgca
ttgaataaagtttctgccctcaaggctcctttagttgcacatgctagccaaccgcacata
aaatcttcactcccaaggtctgtattggtggttcttggaattgcatctgattctcaaagt
tcaagtcaggcgcagcctcctcagcctccaactgatgataaagagagctcagataaagag
gcagtaaccgaagtatccaaagaatcatctgcagcaagttga
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