Ipomoea nil (Japanese morning glory): 109159812
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Entry
109159812 CDS
T04663
Name
(RefSeq) exosome complex component RRP4 homolog
KO
K03679
exosome complex component RRP4
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109159812
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ini03019
]
109159812
Messenger RNA biogenesis [BR:
ini03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
109159812
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
109159812
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Transferase
KH_6
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
109159812
NCBI-ProteinID:
XP_019163468
LinkDB
All DBs
Position
Un
AA seq
344 aa
AA seq
DB search
MGALGFNRTRCKANWVEIAKLAVKFSPRRHDYDELKESPSKTLSILYPLVGRLLEDGSTI
ECNDEGAEFVRAHVTNYDLGEFLWHPKLEDLQQLLPFEPYPDAIDPAMPMSAVQVNRFRC
GGTVVGFFNLYRCLNRGKLKYRLSHFVSNVFFFNFQRRRTAVDELNMRSIFEEHDVVCAE
VRGFQHDGSLHLQARSQKYGKLERGQLLIVSPYLVKKRKQHFHHLDQYQIDLILGCNGFN
WIGEHVDVKDDTIEDPSTKSSTSMVLEEEEKYTSPEVRLNVCRIANAIRVLSNLGFMITV
EVLLETVGLSESLNHVHEMLGAEFYVMVAEKEAERRRSQLTKKR
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atgggagctcttggcttcaatcggacgaggtgcaaagcaaattgggtagaaattgcaaag
ctggcggtgaaatttagccctcgtcgccacgattatgatgagctcaaggaatcgccctct
aagacattgtctatcttgtacccgctcgtcggaaggcttcttgaagatggatcaacaatc
gagtgcaacgatgagggcgcggaattcgtccgagctcatgttacaaattacgatttgggt
gagtttctctggcacccgaagcttgaagatctacagcagctgcttccatttgaaccgtac
ccagacgctattgatccggccatgccaatgtcagctgttcaggtgaacaggttccggtgc
ggcggaactgtggtggggttcttcaatttgtacagatgtttgaataggggaaagctgaaa
tacagattatctcattttgtttcaaatgtgttctttttcaatttccagagacgacgaact
gcagttgatgaactaaacatgagaagtatatttgaggagcatgatgttgtttgtgccgaa
gttcgtggtttccagcatgatggtagtctgcacctgcaagctagaagccagaaatatgga
aagctcgaaaggggtcagctgctcatagtttctccttatctagtgaagaagcgtaaacag
catttccatcatctggatcaatatcaaattgacttgatacttggctgcaatggcttcaat
tggatcggtgagcatgttgatgtaaaagatgacacaatagaagatcccagtaccaaatct
agcacttcaatggtcctcgaggaagaggaaaagtatacttccccagaagtcaggttaaat
gtatgcaggatagcaaatgccatcagagtattatctaatttagggtttatgataactgtg
gaggtgctattggagacagttggcttgagcgagtcactgaatcatgtacacgagatgctt
ggggcagagttctatgtaatggttgccgagaaagaagctgaaagacgacgaagccaattg
accaaaaaaagatga
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