Ipomoea nil (Japanese morning glory): 109160253
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Entry
109160253 CDS
T04663
Name
(RefSeq) DNA mismatch repair protein PMS1
KO
K10858
DNA mismatch repair protein PMS2
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03430
Mismatch repair
ini03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
109160253
03460 Fanconi anemia pathway
109160253
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ini03400
]
109160253
DNA repair and recombination proteins [BR:
ini03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
109160253
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_mis_repair
MutL_C
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
109160253
NCBI-ProteinID:
XP_019164071
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All DBs
Position
Un
AA seq
929 aa
AA seq
DB search
MEGGAASSSDSPTIKPINKGVVHRICAGQVILDLSSAVKELVENSLDAGATSIEVALKDY
GGESFQVIDNGCGISPHNFKVLALKHHTSKLSDFPDLQSLTTFGFRGEALSSLCALGDLT
VETRTRNEPVATHLIFNHSGLLIEETKTARQVGTTVTIKKLFSNLPVRSKEFHRNIRKEY
GKLITLLNAYALIAKGVRLLCSNTTGRNAKSVVLKTQGNGSLKDNIIAVFGMSTFSCLEP
VKVCVQDGCTIDGFISKSGNGSGRNSGDRQFFFVNGRPVDMPKISKLINELYRAANSKQF
PIAIMDFIISPRAYDVNVTPDKRKLFFSDECSILRSLREALEKIYSPDLASYSVNTLEDI
TQEKHNLKSYSHHGRSEELRLKKIFSDGTVSDGQSDSREKSAGGEILRTVEEDIGGSPDA
VVMQNNEVSSTTKDFRLRFHCTEKNSQHCGSPEKQLMDLTSNVTDNHALLCPRSVEKGSN
KEASFMGRSNIMQSSLTKFVTVNKRKHDSISSPLSEVPVLRNGSIQSTENNSAKHKTFSR
PAEDYNMVDDSDESNNNRSESPALSKLDKILNHMKNVIPNSERKPRGENIEEKNGEKKEL
PSTGSELDASYSKYFPDVSEDITDATPQQPYGVSSDSHKVSSDSKIGPTMQFSFKDLMKR
RKQRLARLQLNATASRHMEMQRGYAAASLELSQPLNEEGKTKALAAATSELERLFRKESF
AQMKVIGQFNLGFIIGKLDRDLFIVDQHAADEKYNYERLSESTILNQQPLLRPLKMDLSP
EEEIVVSMNMDTIRKNGFSLEEDLHAPPGLRFNLKAVPFSKNITFGVADVKELISILASS
QEDCHITLSYRKDTSDSICPPRVRAMLASRACRSSVMIGDPLGRNEMQKILEHLAHLKSP
WNCPHGRPTMRHLIDLTTVHKRLDPDPTL
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atggagggaggagcagcttcatcttccgattccccaaccatcaagcccatcaacaagggc
gtcgttcaccggatttgtgctggccaagtcattctcgacctttcctctgccgtcaaggag
ctggtggagaacagcttagacgccggcgccaccagcatcgaggttgccctcaaagactac
ggcggcgaatcattccaggtcatcgacaatggttgcggcatttctcctcacaattttaag
gttctcgctctgaagcatcatacatcaaagctatcagattttcctgaccttcagagttta
actacttttgggttcagaggggaggcattgagttccctttgtgctttaggggatttaact
gtggagacaagaactaggaatgaaccagtggcaacacacttgattttcaatcattctggg
cttctaatagaagaaacaaagaccgcaaggcaagttggtaccacagtcaccattaagaag
ttattctccaatttacctgtaagaagtaaggagttccatcgcaacattcgcaaggaatat
gggaagcttatcactttgttgaatgcctatgctctgattgctaaaggagttagattgctt
tgctccaatacaactggaagaaacgcgaagtctgtagtactaaagacacaaggaaatgga
tccctgaaagataacatcatagcagtatttggtatgagcaccttttcctgtttagagcct
gttaaagtatgtgtacaagatggttgcacaattgatggcttcatttccaagagtggaaat
ggaagtgggcggaattcgggagaccggcaattcttctttgtaaatggtcggccagtagat
atgcccaaaatcagcaaactcataaatgaactgtatagagctgcaaacagcaagcaattt
ccaattgcaataatggacttcataatttcacctagagcctatgatgtcaatgtaactcct
gacaaaagaaaactatttttttctgatgaatgctccatattgcgctccttaagagaagct
ttagaaaagatatattcacctgaccttgctagctattctgtgaatacattggaggatatc
acacaagaaaaacataatttgaagtcttattcccatcatgggaggtcagaagagctaaga
ttaaagaaaattttttctgatggcactgtttcagacggacaatcagacagcagagaaaaa
tctgcaggtggtgagattttgagaacagtagaggaggacattggcggttctcctgatgca
gtggttatgcagaataatgaggtcagttcaaccacaaaggactttaggctaagatttcat
tgtacagagaaaaatagtcaacactgtgggagtccagagaagcaacttatggatctgaca
agtaatgtgactgataatcatgctttgctatgtccaagatctgtggaaaaaggcagtaac
aaagaggcaagtttcatgggtcggtcaaatattatgcagtcttcacttaccaaatttgtg
acagtgaataagagaaagcatgacagtattagttcgcctctgtctgaagtaccagtactc
agaaatggatctatccaatcaacagaaaacaactctgcaaaacacaaaacattctcaaga
cctgcagaggactataatatggttgacgattctgatgaatctaataacaataggtcagaa
tctccagctttgtctaaattggacaaaatccttaatcatatgaagaatgtgattcccaac
tcagaaagaaagccccgaggagaaaacatagaggaaaaaaacggtgaaaagaaagagttg
ccctctactggttctgaattagatgcttcatatagcaagtactttccagatgtgtcagaa
gacatcacagatgccactccacaacaaccttatggtgtatcatctgattctcataaggtt
tcttctgactcaaagattggtcctaccatgcaatttagttttaaagacttgatgaaaaga
aggaaacagaggctggcaagattacaactcaacgctactgcctctagacacatggaaatg
caaaggggttatgctgctgcatcactggagctctctcaacctcttaacgaagagggcaag
acaaaagctttggctgctgcaacctctgagttggaaaggctgttcaggaaagaaagcttt
gctcaaatgaaggtcattgggcaattcaatcttggatttatcattggcaagttagatcga
gacctttttattgttgatcagcatgccgcagatgaaaaatataactatgaacgattatca
gagtcaacaattttaaaccagcaacctttgcttcggcccttgaagatggatttatctcct
gaagaggaaatagttgtttccatgaacatggacactataaggaaaaatgggttttccttg
gaagaagatttgcatgctcctcctgggcttcgcttcaatctaaaagcagttcctttcagt
aaaaacataacttttggagttgcagatgtgaaggaactaatttctattcttgccagcagc
caagaagactgtcatatcacgcttagttacagaaaggatacatctgattcaatttgcccc
cctagagtacgtgcaatgttagcatcacgagcttgcagatcatctgttatgattggagat
ccactggggagaaatgagatgcaaaagatacttgaacatttggcacacttgaagtctcct
tggaactgtccgcatgggagaccaacgatgcgtcacttgattgacttgaccactgtacat
aaaaggttagatccagatccaacattgtga
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