Ipomoea nil (Japanese morning glory): 109160570
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Entry
109160570 CDS
T04663
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109160570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ini03019
]
109160570
03041 Spliceosome [BR:
ini03041
]
109160570
Messenger RNA biogenesis [BR:
ini03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
109160570
Spliceosome [BR:
ini03041
]
Complex B
Other components
Prp19-related factors
109160570
Complex C
109160570
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_15
NRDE-2
ARM_TT21_C
ARM_TT21
Imm5
Motif
Other DBs
NCBI-GeneID:
109160570
NCBI-ProteinID:
XP_019164401
LinkDB
All DBs
Position
Un
AA seq
913 aa
AA seq
DB search
MAIPKELYPSENDLPYEEELLRNPFGLKLWWRYLVARPDAPFKKRAIIYERALKALPGSY
KLWHAYLRERLELVRNLPVTNSQYQTLNNTFERALVTMHKMPRIWIMYLQTLTEQKLLTR
TRRTFDRALCALPVTQHDRIWAPYLYFVSQRGVPIETSLRVYRRYLKYDPSHIEDFIEFL
VNSELWQEAAERLAGVLNDDQFYSIKGKTKHRLWLELCDLLTQHATEISGLNVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRKLVEKARDIFEEGMTTVVTVRDFSVIFDAYSQFEESML
ALKMEEMSESDVEDEEGDGEKGVEEEDEEDDRLNIAKLEKKLKNFWLNDDKDVDLRLARL
EYLMDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTRQILTYTEAVRTIDPMKAVGKP
HTLWVAFAKLYEKHKDVANARVIFDKAVQVNYKTVDHLAAVWCEWAEMELRHKNFKHALE
LMRRATAEPSVEVKRRVAADGNEPVQMRLHKSLRLWTFYVDLEESLGTLESTKAVYERIL
DLKIATPQIIINYAMLLEDHKFFEEAFKVYERGVKIFKYPHVKDIWTTYLSKFVKRYGKS
KLERARELFEHAVEVAPADAVKPLFLQYAKLEEDYGLAKRAMIVYDLATKAVPANEKLSM
YEIYIARAAEIFGVPKTREIYEQAINTGLPNNKDVKTMCLKYAELEKSLGEIDRARVLYK
HASNYADPRSDPDFWDKWNEFEVQHGNEDTFREMLRMKRSTSASYSQTHNILPELLMQKD
QMQTLEEAKDVLKQAGVDDDQMAAIERQLEPNVNETDSRDKSRVVGFVSAGVVESGAQKT
TANNEDIELPDESDSEGEEDDEGKVEIAQKDVPDAVFGGLVRKREESEKDEGGDGSDSHL
GALERIKRRRQAS
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atggctattcctaaagaattgtatccatctgagaatgaccttccctatgaggaagagctc
cttaggaacccattcggcttgaaattgtggtggcgatacttggtggctcgaccagatgct
cctttcaaaaagcgtgctatcatctacgagcgtgctctgaaagctctccctggcagctac
aagctttggcatgcctatctcagagagcggctcgagcttgtccgcaacctccctgtcacc
aactctcaataccaaaccctaaacaacaccttcgagcgagcccttgtcactatgcacaag
atgccccgcatttggatcatgtacttgcaaaccctaacggagcaaaagctgctgacccgc
acccgccgcacgtttgaccgcgcactgtgtgcactgccggtgactcaacatgatcggatt
tgggcgccctatttgtattttgtcagtcagaggggggtcccaattgagacatcgctccgg
gtttacagacggtacttgaagtatgacccctcccacattgaggacttcattgagttcttg
gtgaattcagagttatggcaggaggctgcagaaaggttggctggagtattgaatgatgac
cagttctattcaattaagggaaagacgaagcaccggctgtggttggagctgtgtgatttg
ttgactcagcatgctactgaaatttcagggttgaatgtggatgcaattattaggggaggg
attcgcaagttcacggatgaggttggaaggctatggacctccttggcagattattacatc
cgaagaaaattagttgagaaggcaagggacattttcgaggagggaatgaccacagtggtg
actgttcgagattttagtgtaatttttgatgcatattcgcagtttgaggagagtatgtta
gctctaaagatggaggagatgagcgagagtgatgtggaggatgaggagggtgatggtgag
aaaggggtagaggaggaagatgaggaggatgatcgattaaatatagcaaaattagagaaa
aaacttaagaatttttggttgaatgatgataaggatgttgatttgagattagcgagacta
gagtatcttatggataggaggccagagcttgctaacagtgtgcttctcaggcaaaaccca
cacaatgtagagcaatggcataggagggtgaagctttttgaagggaatcccacacggcag
atactgacatataccgaggcagttaggacaatagacccaatgaaggctgtagggaagccg
catacactgtgggttgcatttgcaaaactctatgagaagcataaggatgttgcaaatgct
agggtgatatttgataaggcagtgcaggtcaactacaagactgtggatcaccttgctgct
gtctggtgtgaatgggctgagatggaacttaggcacaaaaattttaaacatgcacttgaa
ctgatgaggcgtgctactgcagaaccatctgttgaggtcaaaaggagagttgctgctgat
ggcaatgaaccagttcagatgagacttcataaatcccttaggctttggacgttctatgtg
gatttggaggagagcctgggtacattagagtcaactaaggcagtctatgagaggatttta
gatcttaagattgccacaccccaaatcattattaattatgcaatgcttttggaggatcat
aaattcttcgaggaagcattcaaagtttatgagagaggcgtcaagatttttaaataccca
catgtaaaggacatatggactacctatctttccaagtttgtcaaaagatatgggaagtca
aaattagaacgagctcgagaattatttgagcatgctgttgaagtggctcctgctgatgcg
gtcaagccattgtttttgcaatatgctaaactagaggaagattatggtcttgccaagagg
gccatgattgtttatgatctagctaccaaagctgttccagctaatgagaaattaagcatg
tatgagatttacatagctcgtgcggctgagatctttggggttcctaaaacaagagaaata
tatgaacaggcaattaatacaggacttccaaacaacaaggatgtgaaaaccatgtgccta
aagtatgctgaacttgagaagagtctgggagagattgatcgtgcccgtgtattatacaag
catgcatctaactatgcagacccgcgatctgaccctgacttctgggataaatggaatgaa
tttgaggtacaacatggaaatgaggacaccttccgtgagatgctccgtatgaagagaagc
acttctgccagctatagtcagacacacaacattcttcccgaactcctcatgcagaaggat
cagatgcagacacttgaggaagcaaaggatgtgttgaaacaggcaggagtcgatgatgac
caaatggctgccatagaaaggcagttggagcccaatgtaaatgaaacagactcaagagat
aagagtagggtagttggatttgtgagtgcaggtgttgtagaatctggtgcacagaagact
actgcaaacaacgaggacatcgagcttcctgatgaaagtgattctgaaggagaagaagat
gatgaagggaaagttgagattgcacaaaaagatgtacccgatgctgtgtttggaggctta
gtccgtaagagggaagaatctgagaaagacgagggtggtgatggttcagacagtcatctg
ggtgcacttgagaggataaagcgacggagacaagcctcctag
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integrated database retrieval system
