Ipomoea nil (Japanese morning glory): 109160621 Help Entry 109160621         CDS       T04663                                  Name (RefSeq) uncharacterized LOC109160621   KO K19026   spatacsin Organism ini  Ipomoea nil (Japanese morning glory) Brite KEGG Orthology (KO) [BR:ini00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:ini03400]     109160621 DNA repair and recombination proteins [BR:ini03400]  Eukaryotic type   DSBR (double strand breaks repair)    HR (homologous recombination)     Other HR factors      109160621 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Spatacsin_C Motif Other DBs NCBI-GeneID:  109160621 NCBI-ProteinID:  XP_019164441 LinkDB All DBs Position Un AA seq 3170 aa AA seqDB search MELPCEAEVPPILQLKKWDPSEYQLVLSKFREGFLSPTREILLLLSYHYEALLLPLARDK SIKYPENCNYGNSEDSTSLTSRMPTFAVPCSAELGDDIPSTSKSIEMDGIHTLESDTRKS NKYPFIHDVNSLTWGICEDSYSQYEDKPFRELLFVVGNHGVTVHAFSQSCTYEEEMGSTS ENDTGQGSWVEWGPGSPATLSQELDGQQESGWHYDDSFDVFDISSNIAAEGGPYSMCTEV TNDLPFENISEKRWLRTLLTKVETLKSDEVVYTRFPDNSLFDPSAMAVSFRLFHNDSLLL DFLSHGCSSSQEKDSTNLSILDPQNSTSADSMPITVGCYRCLRVFSNGSQCLIGFALTLT EFVPQTNERKNSKILVAVAKLLSWGLKWVFTVALDENVERHAAAEWTDFRFSCALLICLN ASGLIYFYDAKNGLYVACLDLLHICGDLSVKIDGNCVEDKDYIQLPNKAGNRVCQSRFER LFVMLNALTLVVIDKHGVSYVIQASDYIPRKYHQLENLLPYYEDIGLGPLAAWDVGAADI GYQRDISGEGNTVTKKSSFTSSARNKGVKRSPESNFKEPIVKNWCEFLGCKLPSGLMRKF FLPIYKFHEDDVICLSPFGITRLLKGRNSQDKSKCRLVHSSLHVDLSLNDDNSYNVQGCE AIVNEAIGCTFQGCLYLVTENGISVVLPSLSISSNFYPIEAIGYRQSGYLYGLECDFDIF AKIERVKKPLSSWKVEILDKVLLYEGLEQADQLCLANGWDLSLSRIRCLQLALDYLKFEE IENSLEMLEGANLAEEGIMRLLFASVYLMFHKVGNDSEVSAASRLLALATGFATKMIRTY GLSLHKRDNPKSWNDQNALATLHMLEQIDMKSEKMENSRKIQKMAHFLEIIRSLQWQLNS KFKRPGQGLADRDGLLSDMEFSLEDSKILDLSRDVLPFDSSNQRESAVPAVELESTNDEN LALMPVDSLDSKTHLALENPKDMIARWESDNLDLKTIVKDALLSGRLPLAVLKLHLHRLQ DLPEQENHDTFSEVREVGKAIAYDLFLKGETGIAVATLQKLGEDIETSLKQLAFGTVRRS LRLQIVDLMKRYGYLGPHEWKTLEMIALIERVYPCRSFLGTFCSRQQKINGEFNGDVPKE INLQILHPLARDLVIVCGELDGVVLGPWTNIAKYTSHSETDDDSTHTSYWTAAAVWSGAW DQRIVDCIVLDQQFLLGVNVLWESQLEYHIRHNDWLQVSGVLEVIPSYALSHGNLAVNLE SSRSAPVVEYPHEPEAPDSGNYAYFLEELDSVCLNVPDVQIVRFPAHIICSMWLRVLMEQ QLAKEYIFLKDYWGSLEEMVNLLARSGFIIDTHDSTVLEEGSFEKFPDSLLSINDSRSQS NTTQALHKLIVYYCAQHNLPNFLDLYLDHHKLGLDDEALSLLENAAGDNQWVRWLLLQRV KGKEFEASFSNACAVASRGVAPGNNLTVMEVQDIIHTVDDIAEGGWEMAALATLMYSPIP IQDCLSSGSVSRHHNSAQCTLENLRPALQCFPTLWRALIAACFGQDPTCSVQGSRLKFFA CSDLLDYLTWREDVFFSSGRDASLLQMLPCWFPKAVRRLIQLYIQGPLGWQSFADLPMYE TFLPRDVDHAAISPMSWEIAIQKHIEEELYDSSLKKESGHGIEHHLHRGRALAALNNLLA VRAQKLKSESPQRGRPGSSHAHSQTIIQSDMQTLLGPITETEQLLLSSVIPLAILHFKDS VLVASCAFLLELCGLPAATIQIDVAALRRISSFHKSGDYADHYRQLNTRSSSFHSTIDGD ISESLARALADYYRHHDCLGCGSQKDNQSSITSRHQSQALMLVLQHLEKASLPLVTEGVT CGSWLMTGNGDGVELRSQQKAVSQRWNLVIAFCHAHHIPLSTKYLAVLAKDNDWVGFLSE AQIGGYPSETVIHVASEEFSNPRLKTHILTVLRSMQARKKVSSTSSLDTAEKEGKTSFSK ENVYAPTELFGIIADCENQKSPGQVLLQKAKNLCWSLLAIIASCFPDVSPLSCLTVWLEI TAARETSAIKVNNIASQIANNVGAAVEATNSLPASARAPTVHYNRRNSKRRRLMDPMSID SLTFRAPEVSSPSSSVSVRGIITEDAMDKQVAQDEKVSIDSTEVFASLSRMVAVLCEKNL FLPLLRAFEMFLPSCSLLPFIRALQAFSQMRLSEASAHLGSFSARIKEEPHAQANMWKEG QAGRSWICSTAVKAADAMLLKCASPYEKRCLLQLLAATEFGDGGSAAASYRRLFWKINLA EPSLQKDDSLHLANESLDDASLLVALEKHGYWEHARNWARQLETSVGSWKSAVHHVTEMQ AESMVAEWKEFLWDVQEERVALWGHCQTLFIRNSFPPLQAGLFFLKHAEEAEKDLPTREL HELLLLSLQWLSGMITQSNPVYPLNLLREIETRAWLLAVESESQVKSEGEITSKSCNREI TTSKSSNIVEHTANIITKMDNHINHLRSKIVERTDAREINLTQLRTPQVLDSTSSGAKAK RRTKSFVPSRKPSVDALEKGSESEGLFQFNNLKDDTQLVDENFKVESFSRWQERVEPLEL ERAILSLLEFGQITAARQLQQKLSPDNMPSEFTIVDTALKLAAFSTPNQNVLTSVLDDGV RFIMHSYNLLHDQHIIDPLQVLESLAVVPAEGRGRGLCRRVIAVVKSANVLGLSFSEAFD KQPIEILQLLALKAQDSFEEADLLVQTHPMPAASIAQILAESFLKGLLAAHRGGYMDSQK EEGPAPLLWRFSDFLKWAELCPSEPEVGHALMRLVITGQEIPHACEVELLILSHHFYKSS ACLDGVDVLVALAATRVEAYVSEGDFPCLARLITGVGNFYSLNFILGILIENGQLDLLLQ KFSAAVDANAGFAEAVRGFRMAVLTSLKQFNPDDLDAFAMVYNHFDMKHETASLLMSRAE HSSQQWFFRYDKDQTDDLLASMRYYIEAAEVYSSIDAGNKTCGACAQASLLSLQIRMPDL HWLSLSETNARRVLVEQSRFLEALIVAEAYNLNQPGEWALVLWNQMLRPELVEQFIAEFV AVLPLQPSMLLELARFYRAEVAARGDQSQFSVWLMTGGGLPAEWAKYLGRSFRCLLKRTR DLRLQLQLASIATGFVDVIDGCNRALDKVPENAGPLVLRKGHGGGYLPLM NT seq 9513 nt NT seq  +upstreamnt  +downstreamnt atggagctcccttgtgaggctgaagtccctcctatactgcaactaaagaaatgggacccc tctgaataccaacttgtactttcaaagttccgtgaaggttttttatctccaacaagggag attttgctattgctctcatatcattacgaagctctactgcttcctctggccagagataaa agtatcaagtatccagaaaattgtaattatggaaactccgaggattcaacttctctgaca tcaaggatgccgacatttgcagtgccttgttcagcagagctgggggatgatattccaagc acttctaagtcaattgaaatggatggtattcataccctggaaagtgatactagaaagtct aacaaataccctttcatccacgatgtaaactccctgacctggggtatatgtgaagactct tatagtcagtatgaagacaaaccttttagagagctcctatttgtagttggcaatcatggg gtaacagtccatgcatttagtcaatcttgtacatatgaagaagaaatgggatccacatca gaaaatgatactggacaaggatcatgggtggagtggggacctggatctccagcaacttta tctcaggagttggatggacagcaagagtctggctggcattatgatgattccttcgatgtt tttgacataagcagcaatattgcagcagagggaggaccatatagcatgtgtacagaagta acaaatgatttgccatttgagaatatttctgaaaaaagatggctgcgtacattgctaaca aaagttgaaacattaaagtctgatgaagtagtatatactagattcccagacaattcatta tttgatccctctgctatggcggtctcttttcgcctttttcataatgattcactgcttttg gattttctatctcatggctgttcttcatcacaggaaaaagacagtaccaatttgtcaatt ttagatcctcagaacagcacatctgcagattccatgcccatcactgtaggttgttacaga tgtttgagagtcttctctaatggttcacaatgcttaattgggtttgccttgacactgacc gaatttgtgcctcagacaaatgaaagaaaaaacagtaaaattttagttgctgtggcaaag ctactcagttggggattaaagtgggtttttacagtggcactagatgaaaatgttgagagg catgcagctgctgagtggacagactttaggttttcctgtgctcttcttatttgtcttaat gcctctggcttaatatatttttatgatgcaaaaaatggtttgtatgtggcctgtctagat cttttacatatttgtggagatttatctgtgaagattgatgggaattgtgttgaagacaag gattatattcagctacctaataaggccggtaatcgtgtttgtcaaagcaggtttgaaagg ctttttgtcatgttgaatgccttaactttagtcgtgattgataaacatggtgttagttat gtaatacaagcttctgattatatcccaaggaagtatcaccaacttgagaacttgcttcca tattatgaagatattggacttggaccactggcagcatgggatgtaggtgctgctgacatt ggctaccagagggatatttcaggtgaagggaatactgttactaaaaagtcttcttttact agcagtgcacggaataagggtgttaagagaagcccagaaagtaattttaaggagccaatt gtaaaaaattggtgtgagtttcttggctgtaagctaccatcgggccttatgagaaaattt ttccttcctatttataagtttcatgaagatgatgttatttgcttgtcaccttttggaata actcggcttcttaaaggacggaactctcaagataaaagcaaatgccgacttgttcattct agtttgcatgtagatttatctctgaatgatgacaacagctacaatgtccaaggttgtgag gctattgtgaatgaagcaattggttgcacttttcaaggttgtttgtatttggtgacagaa aatggtatttctgtagtcctcccttctctttcaatttcttcaaatttctatcctatagaa gctattggatatcgtcaatcaggctatctttatggtcttgagtgtgatttcgatatattt gcaaaaattgaaagagttaaaaagcctttgtcatcatggaaagtagagattttggataaa gttcttttgtatgaaggtcttgaacaggcagatcagctatgtttggcaaatggatgggat ttgagtctttcccggattcggtgcttgcaacttgctttggattacctcaaatttgaggag attgagaattctctggagatgcttgagggtgccaatttagctgaagagggcatcatgaga ttgctctttgcttctgtttatctgatgttccacaaagttggcaatgacagtgaggtttct gctgcatcaaggctgcttgctttagccactggttttgcaaccaagatgatacgcacatat ggtttatcattgcataaaagagataatccgaagtcatggaatgatcaaaatgccctagcc actctccacatgttggagcagatagatatgaagtctgaaaagatggaaaattcaagaaaa atacagaagatggctcatttcctggaaataattcgaagtttgcagtggcagctaaattct aaattcaaaaggccaggccaaggattggcggatcgtgatggcttattaagtgatatggag ttttcattggaagactcaaagattcttgatctttctagagatgtcttaccgtttgattcc tctaaccaaagagaatctgcagtgcctgcagttgaattggagtcaactaatgatgaaaat cttgctttgatgccagtggatagcttggactccaaaacacatttagctttagagaatcca aaagacatgattgctcgatgggaatcggacaatttggatttaaaaacaattgtaaaagat gctttactttctggccgtcttcctttggcagttcttaagttgcatcttcatcgtttacaa gacttaccagagcaggaaaatcatgacacttttagtgaagttcgtgaagttggaaaagca atagcttatgatttatttttgaagggtgaaactggaattgccgttgcaacactgcaaaag cttggggaagacattgaaaccagtcttaaacagttggcttttggcactgttaggagatct cttcggctacaaattgttgaccttatgaaaagatatggatatcttggaccacatgagtgg aagactttagagatgattgcacttattgagagggtgtatccttgcaggagtttcttaggt acgttttgtagccgacagcaaaagataaatggggaattcaatggagatgtgccaaaagaa attaacttgcaaatattgcatccgctggctagagatcttgtcattgtatgtggtgagctt gatggagttgtgttgggtccatggacaaatatcgctaaatacacaagtcattctgaaact gatgatgatagtactcacacaagttattggacagctgctgcagtatggtctggtgcctgg gatcagagaattgttgattgtatagtacttgatcaacaattccttctgggggttaatgta ttgtgggaatcccaactcgagtaccacatacgccacaatgactggttgcaagtttcagga gttctggaggttattccatcttatgcattgtcccatggaaacctggccgtcaatttagag agttcacgttctgcaccagttgttgaatatcctcatgagccagaggccccagattctggc aattatgcatatttccttgaagaactggattctgtgtgtctgaatgtaccagatgtccaa attgtaaggtttcctgcacacatcatttgctctatgtggttgcgagtgcttatggaacag caacttgctaaggaatatatttttcttaaggattattggggttctctggaagagatggta aatttactagctcgctcaggtttcattattgacacacatgattctacagtgctagaggag ggatcctttgagaagtttccagattcattgctgtctataaatgattcaagaagccagtca aataccacccaagccttacacaaactcatcgtttactactgtgctcaacataacttgccg aacttcttggatctttaccttgaccaccacaagttgggtttggatgatgaagcactttcc ttgttagaaaatgcagcaggagataatcaatgggtgaggtggttgttgctacaaagagtt aaaggaaaagagtttgaagcatcattctctaatgcctgtgcagttgcatcacgcggtgta gctcctggtaacaatctaactgtcatggaagtacaagacattatacatactgttgatgac attgcagaaggaggctgggaaatggcagctttagctacattaatgtattctccaatacca attcaagattgtctgagcagtggaagtgttagcaggcaccataactctgctcagtgcaca ttagaaaatctgaggccagccctccagtgcttccctactttgtggcgtgcacttatagca gcatgctttgggcaagacccaacttgcagtgttcagggctctaggctcaaattctttgcg tgttcggatttattagactatttgacttggcgtgaggatgtcttcttctcttcaggacgt gatgcatcacttctacagatgcttccatgctggttccctaaggctgttcgaagattaatt cagctttatatccagggcccacttggttggcaatcatttgcggacttgcccatgtatgaa acgtttctgcccagggatgttgatcatgctgctattagtcccatgtcctgggaaattgcc attcagaaacacattgaggaggaactgtatgattcttcattgaagaaggaatctggacat gggattgaacaccatttgcatcgtggacgggcgttggctgctcttaataatctgcttgct gtgagagctcagaagttgaaatctgaaagtccacagagagggcggcctggatcatcgcat gcccacagtcaaaccatcatccagtcagatatgcagacacttcttggacccataactgag acagaacagcttcttctctcatctgtcattccccttgctattctgcattttaaggattct gtgttggtggcttcttgtgcatttctattagagttatgtggtctccctgctgctaccatc caaattgatgttgcagctttgagaaggatatcttcctttcacaaatctggagattatgcc gatcactacagacaacttaatactcggagttcttcatttcattctactattgatggtgac ataagtgaatctcttgcccgggctctggcggattattatcgtcaccatgattgtcttgga tgtggtagtcaaaaagacaaccagagtagcatcactagcagacaccaatctcaagctctc atgcttgttctgcaacacttggaaaaagctagtcttcctttagttacagaaggagtgacc tgtggatcctggttaatgactggtaatggtgatggggtcgaattgaggtcccagcaaaaa gctgtaagccagcgttggaatttagtaatagctttttgtcatgcgcatcacatccctctg agcactaaataccttgcagtattagcaaaggacaatgattgggttggatttctatcagaa gctcagattgggggttatccttccgagactgtaatccatgttgcatctgaagagttcagt aatccacgtcttaaaacacatatattgacagttctaagaagtatgcaggcaagaaaaaaa gttagctccacgtcaagcttagatacagccgaaaaagagggcaaaacttctttctcaaaa gaaaacgtatatgcaccaactgaactatttggaattatagcagattgtgagaatcagaaa agtccaggacaggttcttctccaaaaagcaaagaatttgtgttggtcactgttggccata attgcatcttgttttcctgatgtttctcctttgtcttgtcttacggtttggctggaaatt actgcagcaagggaaacttcagccatcaaggttaataacattgcttcccagattgcaaat aatgttggtgcagcagtggaagcaactaattcccttccagcaagtgctagagcccctaca gttcattataaccgaagaaattcaaaacgtaggcggctcatggatcccatgtctatagat tctttgacttttagagcacctgaagtatcttcaccctctagcagtgtgagtgttagaggt attataactgaagatgcaatggacaaacaagtagctcaagatgagaaagtttcaattgat tctactgaagtatttgcttctttatcaagaatggtagcagttctttgtgaaaaaaatttg ttcctccctctcctaagggcttttgaaatgtttcttccttcatgttctctcttacccttt atccgtgctcttcaggccttctcgcaaatgcgcctgtctgaagcttcagcgcacctgggg tccttttctgccagaattaaggaagaacctcatgcacaagcaaatatgtggaaagaaggg caagctgggaggtcttggatatgctctacagctgtcaaagctgctgatgcaatgctctta aaatgtgcttcaccttatgaaaaaagatgtttactgcagctccttgctgcaactgaattt ggtgatggggggtctgctgcagcttcatatcggcggcttttttggaaaataaatttggca gaaccttcattacaaaaggatgacagcctacacctagcaaacgagtctttggatgatgct tcactattagttgcattggaaaagcatggttattgggaacatgcacggaattgggcaaga cagttagagaccagtgttggatcttggaaatctgcggtgcatcatgtgactgaaatgcag gctgagtccatggttgcagagtggaaagagtttctttgggacgtccaagaagaaagagtt gctttgtggggccactgccagacactatttattagaaattcttttccacctttacaggca ggactattctttcttaagcatgctgaggaagcagagaaagatctcccaaccagagagctt catgaactgttattgctttctttgcaatggctgagtggaatgataactcaatctaaccca gtttatccattgaacctcctaagagagattgaaacaagagcatggcttctggctgttgaa tcagaaagtcaagtgaaaagtgaaggagagatcacctcaaaaagttgcaaccgggaaatt acaactagcaagagctctaatattgttgagcacactgcaaatattataacaaaaatggat aatcacataaaccatttgaggagcaaaattgtggagaggactgatgcaagagaaattaac ctcacacaactgcggactcctcaagttctggattctacttcttcaggtgctaaagctaaa cgcagaaccaaaagctttgttccatcaaggaagccttctgttgatgcattggagaaaggc agtgaatctgaaggcttatttcaattcaacaatctgaaagatgatacacagctagtagat gagaactttaaagtagaatctttctccagatggcaggaaagagtggaacctcttgagcta gaaagggccatactttcactactggaatttggacaaataacagctgctagacagctccaa cagaaattgtctccagacaacatgccatctgaattcacaattgtggatactgctcttaag cttgctgctttctctactccaaaccaaaatgtgttaacatcagtgttagatgatggagtg cgattcattatgcattcatacaatcttcttcatgatcagcacattattgaccccctgcag gtattggagagtttagcagttgtccctgcagaaggcaggggacgaggactctgcaggaga gtgatagcagtcgtgaagtcggcaaatgtgttgggcctttcgttttcagaggcatttgat aagcaaccaattgaaattttacaattgcttgctctcaaagcacaagattcatttgaagaa gcagatctcttggtgcaaactcatcctatgccagcagctagcattgctcaaattcttgct gaatcttttctgaagggattgctagcagcacatcgtgggggatatatggattctcaaaag gaggaaggacctgcccctttgttgtggagattttcagatttcttgaagtgggctgagctt tgcccttccgaaccagaagtaggccatgctttaatgcgcttagtgatcactgggcaagaa ataccgcatgcctgtgaggtggagcttcttattctgtcccaccatttctacaagtcatct gcatgccttgatggagtcgatgttcttgtagctcttgcagcaaccagggtggaagcttat gtttctgaaggcgattttccgtgtttggctcgattgataactggagtggggaatttttat tcacttaattttattctcggaattcttattgaaaatgggcagctggatcttcttctccaa aagttttcagctgctgtggatgcaaatgctggttttgcagaggctgttagaggatttaga atggcagttctgacgtcactcaagcaatttaatcctgatgatcttgatgcatttgccatg gtttataatcactttgatatgaagcatgaaactgcatctcttttgatgtctcgggcagaa cattcatctcagcaatggtttttccgttatgacaaggatcagactgatgatctcctagca tccatgcgatattacattgaagctgctgaagtttactcttccattgatgctggcaataaa acatgtggagcctgtgctcaggcatcactattgtcccttcaaattcgaatgccagatttg cattggcttagtctatctgaaactaatgcacggcgagttctggttgagcaatcccgtttc ctggaggctctaattgttgctgaagcttataatcttaaccagccaggcgaatgggccctg gtactttggaatcaaatgcttagaccagagcttgttgaacagtttattgctgaatttgtg gctgtactccctctccaaccctcaatgctccttgaacttgcaagattttatagagctgag gtggctgccagaggggatcagtcccagttctccgtatggttgatgaccgggggaggactt ccagccgaatgggcaaaatacctagggagatcatttagatgtttgttgaaaagaacgagg gatctaagattgcagctacagctggccagcattgctactgggtttgttgatgtgattgat gggtgcaatagagcattggataaggtccctgaaaatgctgggcctcttgtcctgaggaaa gggcatggagggggatacctccctctcatgtga

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