Ipomoea nil (Japanese morning glory): 109161115
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Entry
109161115 CDS
T04663
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109161115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ini03019
]
109161115
03012 Translation factors [BR:
ini03012
]
109161115
Enzymes [BR:
ini01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109161115
Messenger RNA biogenesis [BR:
ini03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109161115
Translation factors [BR:
ini03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
109161115
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
DEAD
Helicase_C
dsrm
HA2_N
nSTAND3
AAA_22
AAA_19
ATPase
Dicer_dimer
AAA_11
NPHP3_N
T2SSE
NACHT
PhoH
ABC_tran
AAA_7
Myosin_head
Motif
Other DBs
NCBI-GeneID:
109161115
NCBI-ProteinID:
XP_019165009
LinkDB
All DBs
Position
Un
AA seq
1217 aa
AA seq
DB search
MTWPTLQAFHPQFPFQNPKTHRTISSSADAFSAAAIRMKDRMPSPHGAVYVPPHQRLRSV
IVAPSATAAPQPGGGGLTPTAPIDSKPSFSSKTSFPKSKTNNPYPYLPPHHQLQPQQQCH
FRNTQPQKNPQLDDVYEEGSHRDYELPVFVGSATSDKVDAWKWKMTTLLRDNDNQEIVSR
EKKDRRDYEQIAALASGMGLYSHMYAKVVVVSKVPLPNYRFDLDDKRPQREVILPPGLPR
RIDDHLKNYLSCKPSTAMFSRSSSNCSIGTDEGLFELPEPLPHNTAAMDNVIRRRSMQMH
TEQQSWQESAEGRKMLGFRCSLPAYKEKDAILSAISQNQVVIISGETGCGKTTQIPQFIL
ESETESMRGAACSIICTQPRRISAMSVAERVAVERGEKLGEAVGYKVRLEGVKGRDTHLL
FCTTGILLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSAT
LDAELFSSYFGGAPAVHIPGFTYPVQTHFLENILDMTGYRLTLYNQVDDYGQEKAWKVNK
QAPRKRKSQLVSAVEDALGAADFKDYSPQTRESLSCWNPDCIGFNLIEYLLCHICENEGP
GAVLVFMTGWDDISSLKEKLQCHPTLGDASRVLLLACHGSMASLEQRLIFDEPEGGVRKI
VLATNIAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKVSAQQRRGRAGRVR
PGICYHLYPRCVFDALADYQLPEILRTPLQSLCLQIKSLKLGSISEFLSRALQSPELLAV
QNAIEYLKIIGALDENENLTVLGRYLTMLPMEPKLGKMIILGAIFNCLDPVLTIVAGLSV
RDPFLAPLDKKDLAEAAKAQFSRDHSDHLALVRAYEGWRDAEKDLAGYEYCWKNFLSAQS
MKAIDSLRREFYSLLKDAGLVDSNAAIYNAWSYDLCLLRAVICYGLYPGICSIVHNEKSF
SLKTMEDGQVFLYSNSVNARDSKIPFPWLAFNEKIKVNSVFLRDSTAVSDSVLLLFGGSI
LKGNMEGHLTMLGGYLEFFMSSAIAEMFQTLRRELDELIQTKLLYPRMDLHAYHELVSAI
RLLLSGDQCSGKFVFNHQVVQQSKPFVAASSPAAAMISRTESGPGGDNSKSRLQTILSRA
GYSAPVYETKQLGNNQFRATVEFNGTQIIGRPCNNKKQAEKDAAAEALDWLLGENRATNG
NVDQISMFLKKSKTDHN
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgacctggcctactcttcaagcttttcacccgcaattcccattccaaaaccctaaaacc
caccgaaccatcagctccagcgccgacgcattttccgccgccgccatcaggatgaaggac
cggatgccgtctccacacggcgccgtttacgttcctcctcaccagcgcctccgctccgtc
atcgttgctccctccgccactgccgctccccagcctggtgggggcggcctcactcccacc
gcacctatcgattcgaagcccagttttagcagcaaaacctccttccctaaatctaaaact
aacaatccatatccttacttgccgcctcaccatcaactccaaccgcaacaacagtgtcat
ttccgcaacacgcaaccgcagaagaatcctcagcttgatgatgtctacgaggaaggttcc
caccgtgattacgagctccctgtcttcgtcggttcagccacctcagacaaagttgatgca
tggaaatggaagatgaccacccttttacgtgacaatgataatcaagagatagtctcaagg
gagaaaaaagataggcgagattatgaacagattgcagctttagcaagtggcatgggtttg
tatagccatatgtatgcaaaagtagtggttgttagcaaggttccattgccaaactacagg
ttcgatctagatgataaacgtcctcaaagagaggtaattctgccaccagggctaccaaga
aggatagacgatcacctaaaaaattacctttcttgtaagcctagcacagctatgttttca
aggtcaagcagtaattgtagtattggtactgatgaggggctttttgagcttcctgaacca
ctgccacataatacggctgccatggataatgtcattcggcggaggagtatgcaaatgcac
actgagcagcagagttggcaggaatctgctgaaggtaggaagatgcttgggtttcgatgt
agtcttccagcttacaaggaaaaggatgcaatattgagtgccatttcacagaaccaggtg
gttattatatcaggtgaaactggttgtgggaagaccacacaaattccccaattcatttta
gagtctgaaactgaatccatgcgtggagctgcatgcagtattatatgtacccagcctaga
agaatatctgctatgtctgtagctgaaagggttgccgtggagagaggggagaaattgggt
gaagcagttggctataaagttcggcttgaaggtgttaagggaagggacacacatctcctt
ttttgtaccacaggcatcttgttgagaagattgctagttgatagaaacttgaaaggtgtg
acacatgtcattgtggatgagattcatgagcgtggaatgaatgaagattttctgctcatt
gttttaaaagatttactccctcgtcgaccagaactaaggttgattttgatgagtgcaact
ttagatgcggagcttttctcatcatactttggtggggctcccgcagtccatattccgggc
tttacttatccagttcaaactcattttctggaaaatattctggacatgacgggatataga
ttgactctatacaaccaagttgatgattatggtcaggagaaggcgtggaaagtaaacaaa
caggctccaagaaagaggaaaagccaacttgtgtctgcagttgaggatgcccttggagct
gctgacttcaaggattatagcccacagacaagagagtctctgtcttgttggaaccctgat
tgtattggcttcaatctcatagaatatcttctgtgccatatttgtgaaaatgaagggcct
ggtgctgttttagtttttatgactggttgggatgacataagttctcttaaagaaaagctc
caatgtcatcctaccttgggagatgcaagccgggtcttattgctggcatgccatggttct
atggccagtttggaacagaggttaatattcgatgagcctgaaggtggagttaggaagatt
gtgttggctactaatattgctgaaactagtattaccatcaatgatgtggtttttgttatt
gactgcgggaaggcaaaagagacatcatatgatgcactcaataatactccttgtttactt
ccttcatggatatcaaaggtttcagctcaacaaagaaggggaagagctggacgtgttcgg
cctggaatatgttatcatctttatcctagatgtgtatttgatgctcttgcagattaccaa
ctgcctgaaattctgagaacacctttgcagtcactttgtttgcaaatcaaaagtttaaaa
cttggtagcatttctgagttcctatccagggctttgcagtcaccagagttgttagcggtt
caaaatgctattgaatatctgaagatcattggggctttggatgagaatgaaaatctcact
gttttaggacgctacttaaccatgcttccaatggaacctaaacttggaaagatgattata
cttggagctattttcaattgtttggacccagttttaactattgtggctggtcttagtgtt
cgtgatcctttcttggcgccactagacaagaaagatctagctgaagctgcgaaggctcag
ttttctcgtgatcatagtgaccatcttgctcttgtccgtgcttatgaaggctggagagat
gctgaaaaagatcttgccggatatgaatactgctggaagaattttctttctgcacaatcg
atgaaagctattgattctcttcgaagagagttctactctttacttaaggatgctggcctt
gttgacagcaatgctgccatttacaatgcttggagttacgatctgtgtttacttcgagca
gttatttgctatggactataccctggaatctgctcgattgtgcataatgagaagtcattc
tcattgaaaacgatggaagatggccaggtgtttttgtactctaactctgttaatgcacgg
gattctaagataccattcccatggctagctttcaacgagaaaattaaagtgaactctgtt
tttcttcgggattctacagctgtctctgactcagtactgctgttatttggtggaagcatt
ttgaagggcaatatggagggccacttgacaatgttgggtggatacctagagttctttatg
agctctgcaatagcagaaatgttccaaactttaaggagagagctcgatgagctaattcag
accaaactcctatatccgaggatggatttacatgcatatcacgaacttgtgtctgcaata
cggttgcttctctcaggggatcaatgcagtggtaaatttgttttcaaccatcaggttgta
caacaatccaagccatttgttgctgcatcatcaccagcagcagccatgatatcaagaacc
gaaagtggtcccgggggtgataattctaagagccgactacagactatactaagccgagca
ggctattcagcccctgtgtatgagacaaaacaacttggtaacaaccagtttcgagcaaca
gtggagttcaatgggacacagataattggccggccatgcaataacaagaaacaagcagaa
aaagatgcagcagctgaggctctggattggttgttaggggaaaaccgagcaacaaatggt
aatgttgatcagatatcaatgtttctgaaaaagagcaagacagatcacaattga
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integrated database retrieval system
