Ipomoea nil (Japanese morning glory): 109162175
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Entry
109162175 CDS
T04663
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
ini
Ipomoea nil (Japanese morning glory)
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ini03019
]
109162175
03041 Spliceosome [BR:
ini03041
]
109162175
03036 Chromosome and associated proteins [BR:
ini03036
]
109162175
Enzymes [BR:
ini01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109162175
Messenger RNA biogenesis [BR:
ini03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
109162175
mRNA cycle factors
Common to processing body (P body) and stress granule
109162175
Spliceosome [BR:
ini03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
109162175
Chromosome and associated proteins [BR:
ini03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
109162175
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
109162175
NCBI-ProteinID:
XP_019166446
LinkDB
All DBs
Position
Un
AA seq
636 aa
AA seq
DB search
MSSWGDPDENVPRDKAGTRGGRGGSYVLPHLRNRAPAARTPAPSHSAPTFSSDRSGDSGP
GRGSRWGGPRQGGGRGGDRGGGDRGGRGWGSRGGGWGSRGGGRGREQEVNPFGNDDIDGG
AETGNPQEGTGINFDAYEDIPVETSGENVPPPVNTFAEINLGNTLNLNITRCKYVKPTPV
QRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGNNPQRPRGVQTLYPLALILAP
TRELSMQILEEAKKFSYQTGVRVVVVYGGAPIVEQLWELEKGVDILVATPGRLVDLVERR
KVSLRMIRYLALDEADRMLDLGFERPIRKIVEEMDMPPSGVRQTMLFSATFPKSIQSLAS
DFLSNYIFLAVGRVGSSTDLIVQRVEFVKDNDKRSYLLDVLHAEKANEIHGKKALTLVFV
ETKRRADSLERWLCSNQFPATAIHGDRTQQEREHALRAFKTGGTPILVATDVASRGLDIP
HVAHVINFDLPNDIDDYVHRIGRTGRAGNTGLATAFFNETNVPLAKALANLMQEAKQEVP
NWLTGYANAPRSHSGGRGKRSGGGRFGGRDFRREDSSSFGRGRSGGGGYGGSSGGGYGGS
SGGGYGGSSGGGYGGGGYGGSSGGGYGGSSGGSAWD
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgagttcatggggtgatccagatgagaatgtgccacgtgataaagctgggactaggggt
ggaaggggtggttcttatgtactacctcaccttaggaacagagcaccggcagccagaact
ccagctccctcacatagtgccccaacatttagtagtgacaggtcaggtgatagtggacca
ggaagggggtcaaggtggggtggtcctaggcaaggtggtggccggggtggtgatcgcggt
ggtggtgatcgcggtgggagaggctggggcagcagaggtggtggctggggcagcagaggt
ggtggccggggtagagagcaggaggtgaacccttttggtaatgatgatattgatggtggt
gcagaaactggcaatccacaggaaggtactggtattaattttgatgcttatgaggatatt
cctgtagaaacaagtggggaaaatgtgccacctcccgtgaatacatttgcggagataaac
ttgggcaataccctaaacctgaatattacgaggtgcaaatatgttaaaccaactcctgtg
caacggtatgcaatacccatttctctagctggacgagatctgatggcttgtgctcagact
gggtctggaaagacagctgctttttgtttcccaattattagtggaatcatgagagggaat
aatccgcagagaccgcgtggagtacagactctttacccacttgctctaattcttgcaccg
acaagagagctttcaatgcagattcttgaggaagctaagaagttctcctatcaaactggt
gtgagagttgtagttgtttatggtggggctccaatagtcgaacagctctgggaactagag
aaaggagttgatattcttgtggcaactcctggaagattagttgatttggttgagagaaga
aaggtctcattgcggatgataagatatttggcacttgatgaggctgatcgtatgctggat
ctgggatttgagcgtccaatcagaaaaatagtggaggaaatggatatgcccccatctggt
gtaaggcagactatgctgttcagtgccacatttccaaagtcgatccagagtcttgcatct
gattttctctcgaactacatatttttggctgttggaagggttggttccagtaccgatttg
attgttcagagagttgaatttgttaaagacaatgacaagagaagctatctgctggatgtt
cttcatgcagagaaggcaaatgaaattcatggcaagaaagctctaactttggtatttgtg
gaaacaaagaggcgggcggattcattggaacgttggttgtgctcaaatcaatttcctgca
actgccattcacggtgatagaacacaacaggaaagagagcatgcattaagggcgtttaag
acagggggtactcccattttagttgcaactgatgtggcatcgcgtggtcttgatattcct
catgttgctcatgtcatcaattttgacctccctaacgacatagatgattatgtgcaccgg
ataggaaggacagggcgtgctggcaatacaggattggcaacagccttttttaatgaaact
aatgtaccattggccaaagcattggcgaatctgatgcaagaagctaagcaagaggtacct
aattggttgaccggctatgctaatgctccccgttcacacagcggaggtagaggcaagcgg
tctggtgggggccgttttggtggccgtgactttagaagggaggattcctcctcatttgga
agaggcaggagtggcggcggtggttatggcggttctagtgggggaggatatggcggttct
agtgggggaggatatggcggttctagtgggggaggatatggcggcggtggttatggcggt
tctagtgggggaggatatggcggttctagtgggggaagtgcgtgggactaa
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