KEGG   Ipomoea nil (Japanese morning glory): 109163634
Entry
109163634         CDS       T04663                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
ini  Ipomoea nil (Japanese morning glory)
Pathway
ini03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ini00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    109163634
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ini03021]
    109163634
Enzymes [BR:ini01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     109163634
Transcription machinery [BR:ini03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     109163634
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 109163634
NCBI-ProteinID: XP_019167919
LinkDB
Position
Un
AA seq 1214 aa
MREGAETSAGKEKISNGSEKMDIDFEDLEFDEEEDDEPFDAAALQEMNLNKKKLADFCKK
VSTTFFDKYGLISHQINSYNDFIKHGIQRVFDSIGEIVVEPGYDPSKKGDNDWRYAAIKF
GKVTVSRPMFWTGEKFSQDGGEEYLQLWPRHARLQFMTYSARITVQTHLQVYTKKRTRSD
KFKTGIDQFVSKECEMEDTRDLLIGRLPVMVNSDLCWMSDGNKKPDCEFDHGGYFIVKGA
EKTFIAQEQICLKRLWVASNPSWMVSYRPVSKRKRVYIKLTETPKVEPVVRGGEKVLTVY
FSVTEMPIWIFFFALGVSSDREVVNLIDVDTKDTEIVNILVASIHDADSKCESFRKQPVA
LNFVAQLMQNCRFPPQESIEDCINNFLFPSLNSFKQKARFLGYMVKCLLQAYSGKRKADN
RDDFRNKRLELASELLERELRVHLKHVERVMTKAMQRDLYGDRQLQSIEHYVDASIVTNG
LCRAFSTGAWSHPYKRMERVSGVVANLRRTNPLQMTADMRKTRQQVSYTGKVGDARYPHP
SHWGKVCFLSTPDGENCGLVKNLASLGLVSTNILESFLDKLFDCGMEKLVDDTSTILHQK
HKIFLDGDWVGVCGDSGLFVLKLRRMRRRGEVPYQVEIKRDEQHHEVRIFSDAGRILRPL
LVVENLKKIQFLKDGDSFQSFLDNGIVEFIGSEEEEDCRTAWGVNYLLEACKEDPPAKYT
HCELDLSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFPTLNPNVRIDTNTHQLYY
PQRPLFRTMLSDCLGKPKDPNYHRSMLPHPEYYNGQCAIVAVNVHLGYNQEDSLVMNRAS
LERGMFRSEHIRSYKAEVDNKESLGKKMKLEDAVIFGKTQSKIGRVDSLDDDGFPFIGAN
LQTGDIVIGKYAESGADHSVKLKHTERGMVQKVVLSGNDEGKSFAVVSLRQVRSPCLGDK
FSSMHGQKGVLGFLESQENFPFTIQGIVPDVVINPHAFPSRQTPGQLLEAALAKVIALGK
RIGHRGELKYATPFSTLSVDEITKNLHSLGFTRWGNERVYNGRTGEMVNSLVFMGPTFYQ
RLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFT
LSDSSQMHICRKCKNMANVIQRPVLGGRKVRGPYCRFCESVEDIVKVNVPYGAKLLCQEL
FSMGLSLKFDTEIS
NT seq 3645 nt   +upstreamnt  +downstreamnt
atgagagaaggagcagagactagtgctgggaaagagaagatatcaaatggatctgaaaag
atggatatagattttgaagatcttgaatttgatgaagaagaagatgatgagccatttgac
gcagctgctttacaagaaatgaatttgaacaaaaagaaattagctgatttctgcaaaaaa
gtatccactacattttttgacaagtatgggctgattagtcaccagatcaattcatacaat
gacttcatcaaacatgggatccagagagtttttgattcaattggcgaaattgtagtcgag
cctggatatgatccatcaaagaagggtgataacgattggagatatgccgcaataaaattt
gggaaggtgaccgttagtcgaccaatgttttggactggagaaaagttttctcaagatggt
ggtgaagaatatttacagttgtggccccgacatgcccgccttcagtttatgacatattct
gccaggataacagttcagacccatcttcaggtgtatactaaaaagaggacccggagtgac
aagtttaaaaccggaatagaccagtttgtctcaaaggaatgtgagatggaggataccagg
gatcttctaattgggagactgcctgtgatggtaaactctgacctctgctggatgagtgat
ggcaacaagaagcctgattgtgaatttgatcatggaggatatttcattgtaaaaggggct
gagaagacctttattgcacaggaacaaatatgcttaaaaagactctgggtagctagcaat
ccaagttggatggtttcatatcgcccagtttccaaaaggaagagagtatatataaagttg
acagagacccccaaagtagagcctgtggtgaggggaggagaaaaagtcctgaccgtgtat
ttttctgtgacagaaatgccaatttggatattcttctttgcacttggtgtatcctctgat
agagaggtagtgaacttgattgatgtggacacgaaagacacagaaattgtgaatatactt
gttgcttccatccatgatgctgatagcaagtgcgagtcatttaggaaacagccggtagca
cttaattttgttgctcaacttatgcagaactgtagatttcctcctcaagaatctattgaa
gattgcatcaacaacttcctgtttcctagtcttaacagcttcaagcagaaggctcgattt
cttggatatatggtaaagtgtctcttgcaagcttattcaggtaagcggaaagcggataat
agagatgattttaggaataagaggttggagcttgctagtgagctgctagaacgagagctt
agagtgcatcttaaacatgttgaaagggttatgaccaaggcaatgcaaagagatctctat
ggagatcgacagctacagtcaattgaacattatgtggatgcatcaatagtcactaatggt
ctctgtagggcattttctactggggcatggtcacatccatataagaggatggaaagggta
tctggtgtagtagcaaatcttagacgaacaaacccattgcaaatgacagctgatatgagg
aaaactcgccaacaagtttcatacactgggaaagttggtgatgctagatatccacatcct
tcacactggggaaaagtttgctttctctctaccccagatggagaaaactgtgggctggtg
aaaaatttggccagtttaggtctggtcagcacaaacattctggagtcgtttctcgataaa
ctctttgattgtggaatggagaaactggtagatgatacttcaacaatactccatcaaaag
cacaaaatatttcttgatggagattgggttggagtatgtggagattctggattatttgtt
ttgaaactaaggcgtatgcggcgtaggggtgaagtgccataccaggtggaaatcaaaaga
gatgaacaacaccacgaagtccgaattttttctgatgctggacgaatcctgcgccctctt
cttgttgttgaaaatttaaagaaaattcaatttctgaaagatggagactcctttcaatct
tttctggataatggaatagttgaatttattggttctgaagaagaagaagattgtcgaact
gcttggggagtgaactacctccttgaagcctgcaaggaggatccacctgcaaagtataca
cactgtgaacttgacttgtcatttctactgggtttgagctgtgggattatcccttttgcc
aaccatgatcatgcgaggagggtcctttaccagtctgagaagcatagtcaacaagccatt
ggattccctactttgaacccgaatgttagaatagatactaatactcatcaactgtattat
cctcagaggcctctttttcgtaccatgctgtcagattgccttggaaagcccaaagaccct
aattatcatagatcgatgctgccacaccctgaatactacaatggccagtgtgcaattgtg
gcagttaacgttcacctagggtacaaccaagaggattctttagtaatgaaccgtgcttct
ttggagcgtggtatgtttcggtcagagcatattagaagttacaaggctgaggttgataat
aaggaatccctgggaaagaagatgaaactggaggatgccgtaatttttggaaaaacacaa
agtaagataggacgcgttgacagccttgatgatgatggctttccattcattggtgcaaac
cttcaaactggtgatattgtcattggaaagtatgcggaatcaggggctgatcacagtgtt
aaactgaagcatacagaaagaggcatggttcagaaggttgtactctctggtaatgatgag
ggaaaaagctttgctgttgtgtctctgagacaggttcgttctccttgtcttggagacaaa
ttttctagtatgcatgggcaaaagggtgtgctcggttttctagaatctcaggagaacttt
ccttttacaatacaagggatagttccggacgtagttataaatccacatgcatttccttca
cgtcaaacaccaggccaactgctagaagctgccttagcaaaggtgattgccttaggaaag
cgcattggccatcgaggagaactaaaatatgcaacaccgttttccactctatcagtggat
gaaataacaaagaatcttcatagtcttggattcactagatggggaaacgagagagtttac
aatggccgaactggtgaaatggtaaactccctggttttcatgggcccgacattctaccag
cggcttacgcatatggctgaggacaaagtgaagttccgcaacacgggcccagtccatccc
cttacccgccaacccgtggctgacaggaaacgctttggtggtatcaaattcggtgagatg
gagcgcgactgtctcatagcacacggtgctgctgcaaacctgcacgagcgactcttcaca
ctcagtgattcctcccagatgcacatatgtagaaagtgcaagaacatggccaatgtgatc
caacggcccgtgcttggtgggcgtaaggttaggggtccctactgtcgtttctgtgaatca
gtagaagatatcgtgaaggtgaatgtgccatacggggcgaagctgttgtgtcaagagctc
ttcagtatggggctgtctttgaaatttgacacagaaatttcttaa

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