Ipomoea nil (Japanese morning glory): 109163971
Help
Entry
109163971 CDS
T04663
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
109163971
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ini03021
]
109163971
03019 Messenger RNA biogenesis [BR:
ini03019
]
109163971
Transcription machinery [BR:
ini03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
109163971
RNA polymerase I system
109163971
Messenger RNA biogenesis [BR:
ini03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
109163971
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW1_SPT5
KOW2_Spt5
KOW4_SPT5
Spt5-NGN
KOW
KOW5_SPT5
KOWx_SPT5
Spt5_N
KOW7_SPT5
DUF4438
Motif
Other DBs
NCBI-GeneID:
109163971
NCBI-ProteinID:
XP_019168250
LinkDB
All DBs
Position
Un
AA seq
778 aa
AA seq
DB search
MARRRDEEDEEELEPEDDYQEEDEEEEEKEYAGKKRSRSDYIDEDDEDEEDDDYGGRKRN
KKRSGSHFFDLEAAVDSDDEEEEEEDGEDDFIVDGGADIADEYNSRNIDRRQILLSREDE
DEDFEALERSIQARYARSSDDDEETTNDIDQQALLPSVRDPKLWMVKCAIGHEREVAVCL
MQKCIDSQIRSVIALDHLQNYIYIEAHKEAHVREACKNMRMIYPAKIMLVPIKEMTGVLC
VESKAVDLGRDTWVRMKTGTYKGDLAKVVDVDNVKQRVTVKLIPRVDLQTLANKLEGREV
PNRKALIPPPRFMNIDEARKMNVRVERRRDLMTGDYFDKIGGMMFKEGFLYKTMAMKSIS
SQNIEPSFDELEKFRQPGESDMGSLSTLFVNKKKGHFMKGDRVIVVKGDLKNLKGCVEKV
EENTVHIRPKENNLPKTIAVCDKELCKYFERGNHVKVVSGASEGATGMVVSVEGHVVNLV
SDITKEIIRVFADTVVVSSEVTCGATRIGDYELHDLVLLEDESFGVIIGVESEGFQVLKG
VPKEGEVALVSLREIKAKVYKKGSAHDRYQNGLAVKDVVKVFEGPCKGKQGPVEHIYRGM
VFIYDRHHLEHAGFICAKAQSCVLFGGSRPNGDRKAGPFSSSFGRVPQLPIRSYWGGPPK
NFGGRHGHNALIGADVKIRVGPLKGCKGRVVNLKGSSVLVELEAQVKVVTVDRGHIVENV
NVRTQLREPSRYEFESETPSHPSRTPLHPIMTPMRDPGAATPIHDGMRTPMRNRAWNP
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atggcaaggaggcgtgacgaggaagatgaggaggaattggagccggaggacgactaccag
gaggaggatgaggaagaggaagagaaggagtatgccgggaagaagcggtcgagatcggat
tacattgacgaagatgatgaagatgaagaggacgacgactatggaggtcgtaaacgtaac
aagaagaggtctggctctcatttttttgatcttgaggccgctgttgatagcgacgatgaa
gaagaagaagaagaagacggtgaagatgacttcattgtggatggtggagctgatatagcc
gatgaatataattcaagaaacattgatcgtcgtcaaattcttctctcacgggaggacgaa
gacgaagacttcgaggcacttgagagaagcatccaggctagatatgcaaggtcaagtgat
gatgatgaggaaactactaatgatatagaccagcaagcccttttaccaagtgtcagagat
cccaagttatggatggtcaaatgtgcgattggccatgagagggaggttgctgtgtgtcta
atgcagaaatgtattgactcgcaaattaggtctgttatagcacttgatcatcttcaaaac
tatatatacattgaagcacacaaagaggcccatgttagagaggcatgcaagaatatgcgc
atgatatatcccgcaaaaataatgcttgttccaatcaaagagatgactggtgtcctttgt
gttgaaagcaaagcagttgatcttggcagggatacttgggttagaatgaagactggaact
tataaaggggaccttgcaaaggttgtggatgtagataatgtaaaacagagagttactgtg
aagttaatcccaagggttgacttacaaactcttgcaaacaaattggaagggagggaagtt
ccaaacagaaaagcattgattcctcccccacgttttatgaacatagatgaggctcgaaag
atgaatgtacgtgttgagcgtaggcgagatctaatgacgggtgactattttgacaagatt
ggtggcatgatgtttaaagagggatttctgtataaaacaatggctatgaaatcaattagc
agtcagaatattgagccaagttttgatgaacttgagaaattccgtcaacctggtgaaagt
gatatgggtagtttgtcaactctatttgtgaataagaagaaaggtcattttatgaagggt
gatcgcgtgattgtggtgaaaggggatttgaagaacctgaaaggatgtgttgagaaagta
gaggaaaatactgttcacatcagaccaaaagaaaacaaccttcctaaaacaattgcggtt
tgtgacaaggagctttgcaagtattttgaacgtggaaaccacgtaaaagttgtatccggt
gcgtctgaaggtgcgacgggtatggttgtatctgttgaggggcatgtggtgaacctagtc
tctgatatcactaaggagattatacgtgtatttgctgacactgttgtggtaagctctgaa
gtaacatgtggtgccactcgaattggggactatgagctccatgaccttgtgctactagag
gatgagagttttggtgtgattataggagtagagagtgaaggtttccaggttcttaagggg
gttcccaaagaaggtgaggtagcacttgtgagtctaagggagataaaagccaaggtttac
aagaaagggagtgcacatgatcggtatcagaatggattagcggtgaaagatgtggtcaag
gtttttgagggaccttgcaagggaaaacaagggccagtggaacacatatacagaggaatg
gtgtttatttatgaccgtcatcaccttgagcatgctggctttatatgtgccaaggcacag
tcttgtgttttgtttggtggatcaaggccaaatggtgatagaaaagccggtcccttttca
tcaagctttggacgtgttccacaattgccaataagatcgtactggggtggtccacccaaa
aattttggaggaaggcatggacacaatgctttaattggtgctgatgttaaaattcgggtt
gggccattaaaaggatgcaaaggacgtgttgttaatttgaaaggaagttcagtcttagtt
gaattagaagctcaggtgaaagttgttacagttgatcgtggtcatattgtggagaatgta
aatgttagaacacagctaagggaaccatccagatatgaatttgagagtgaaaccccatca
catccttcacgaactccactccatcccattatgactcccatgagagatcctggagcggca
acacctatccatgatggtatgagaacaccaatgcggaatagagcatggaatccatga
DBGET
integrated database retrieval system
