Ipomoea nil (Japanese morning glory): 109164049
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Entry
109164049 CDS
T04663
Name
(RefSeq) putative tRNA pseudouridine synthase
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
ini
Ipomoea nil (Japanese morning glory)
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ini03016
]
109164049
Enzymes [BR:
ini01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
109164049
Transfer RNA biogenesis [BR:
ini03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
109164049
Prokaryotic type
109164049
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
109164049
NCBI-ProteinID:
XP_019168348
LinkDB
All DBs
Position
Un
AA seq
518 aa
AA seq
DB search
MAVSSLRLSISLRPPTPFRTLQFTIPQKRLTLFVCFCSSSSVAPLSLEPCTTAEVVAPPP
SNAPHRISAAKWEPFRKKKVVMRVGYVGSDYRGLQMQRDVHALSTIEGELEKAIFNAGGI
KDTNFGNLYKIGWARSSRTDKGVHSLATVISLKMEIPEHAWKDDPNGMGLATCVNSYLPE
SIRVFSILPLQKTFDARKECNVRRYSYLLPAEIIGIKNNSTSSEVDCHLSDFNNILNAFE
GEHPFHNYTIRSKYRKQLPTKTKKKDNREKPSQKEAMSESEESDVDESFAAQDVVTTVEE
RTENTPPGIHDNMNNLDDQNPILPIRARWLYETDARDKLSSSHFRKILHCNCGNLEQLHG
MNYVEICVCGESFMLHQIRKMVGTAIAIKRNLLPLDVLKLSLNKFSRIVLPLAPSEVLIL
KANSFASRTLPGNIARPEVLRLLESEDILEAVDQFYSSTMLPQLSRFLDPLASPWREWVA
LLDANTSIPECQLEEVRTGWTGWKLQMKSKKKPLSTLN
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atggcggtctcgtctttacgcctctcaatctctctccgtccccccactcctttcaggacc
ctccaatttacaatccctcagaaacgtttaacattgtttgtttgcttctgctcttcatct
tcggtagcgccactttctctcgagccttgcaccaccgcagaagttgtagctccgccgccg
tctaacgcgccacacagaatctccgccgccaaatgggaacctttccggaaaaagaaagtc
gttatgcgagtcggttacgtcggctccgattatcgaggacttcaaatgcaaagagatgtg
cacgcgctatctaccattgaaggtgaattggaaaaggctattttcaatgctggtggtatt
aaagatactaattttgggaatttgtacaaaattggctgggcaagaagtagccgaactgat
aaaggagtccattcattggctactgttatatctctgaaaatggaaatccctgagcatgca
tggaaggatgatcccaatggcatgggtcttgctacttgtgtgaattcttatctccctgag
agcatcagagtgttcagcatactgccattgcaaaagacatttgatgctagaaaggagtgc
aatgttcgcagatattcttatcttcttcctgccgaaattattggaataaagaacaactca
acctcatctgaagttgactgtcatttatcagattttaacaatatattaaatgcctttgag
ggtgaacatccattccacaactatactatacgatccaagtacaggaaacagcttcctact
aaaaccaagaaaaaagataacagagaaaagccgtctcagaaagaagcaatgtctgaatct
gaggaaagtgatgtagatgaatcctttgcagcacaggatgttgtgacaactgttgaggaa
aggactgagaatactccaccagggatccatgataatatgaacaatctggacgatcaaaat
cccatcttgccaatccgtgcaagatggctatatgaaactgacgccagggataaactcagt
tcttctcatttccgaaagatattacattgtaattgtgggaacttggagcagttacatggt
atgaattatgtggaaatctgtgtctgtggagaatcattcatgttacatcaaatacgcaaa
atggtaggaacagcgattgcaataaagcgcaacttgctacccctggatgttttaaaattg
tctcttaacaagttttcacggattgtcctgccccttgccccatcagaagttttgattttg
aaggccaacagctttgcttcaagaacactacctggcaacatagcaagaccagaagtgttg
agactgttagaatccgaggacattcttgaggctgtggatcagttctacagttccacaatg
ttacctcaattatctagatttttggatcctttagcgtctccatggagggagtgggtagca
cttctggacgcaaacacaagtataccagaatgccaattggaagaagttaggactggatgg
actggatggaaactacagatgaaaagcaaaaagaagcctttgtcaacattgaattga
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