Ipomoea nil (Japanese morning glory): 109165191
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Entry
109165191 CDS
T04663
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109165191
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ini03041
]
109165191
Spliceosome [BR:
ini03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
109165191
Complex C
U5 SnRNP specific factors
109165191
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
109165191
NCBI-ProteinID:
XP_019169397
LinkDB
All DBs
Position
Un
AA seq
2372 aa
AA seq
DB search
MWNQEMWSNNAPPGTAGAVGGGVPPPPPGTAGGLPPIMPPGTTGAGPSSSGGPPPPPSYT
VLPTEAQLEEKARKWMQLNSKRYSDKRKFGFVETQKEDMPPEHVRKIIRDHGDMSSKKYR
HDKRVYLGALKFVPHAVYKLLENMPMPWEQVREVKILYHITGAITFVNEIPWVVEPIYLA
QWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNLLDVDPLEPIQLELEEEEDSA
VYNWFYDHKPLVKTKLINGPSYRRWHLSLPIMATLHRLAGQLLSDLTDHNYFYLFDMESF
FTAKALNMCIPGGPKFEPLYRDMEKGDEDWNEFNDINKLIIRSPLRTEYRIAFPHLYNNR
PRKVKLCVYHTPMIMYIKTEDPDLPAFYYDPLIHPITSKEKKEKRILEDDDDDFELPEGV
EPLLKDTQIYTDTTAAGISLLFAPRPFNMRSGRTRRAEDIPLVSEWYKEHCPPSYPVKVR
VSYQKLLKCFVLNELHHRPPKAQKKKHLFRSLQATKFFQTTELDWAEAGLQVCKQGYNML
NLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANVQF
RLGNVDAFQLADGLQYIFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKG
PGCGFWAPMWRVWLFFLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLE
LRAAVMHDVLDAMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVK
SKADWWTNVAHYNRERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPE
EAVAIYTTTVHWLESRKFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQQQREEL
GLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQ
YLWYEGDKRHLFPNWIKPADSEPPPLLVYKWCQGINNLQEIWDTSEGQCVVMLQTKFEKF
FEKIDLTMLNRLLRLVLDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYY
GLVLDLLLLGLTRASEIAGPPQMPNEFITYNDTRVEKRHPIRLYSRYIDKVHILFRFTHE
EARDLIQRYLTEHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRS
ITTLEWENSFVSVYSKDNPNLLFSMCGFEVRILPKIRMTQEAFSNTRDGVWNLQNEQTKE
RTAVAFLRVDDEHMKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQE
LLDLLVKCENKIQTRIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYS
QQTDVGVTHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRL
TLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGK
LWNLNNYRTDVIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQR
SGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQ
KIHESVVMDLCQVLDQELDALEIETVQKETIHPRKSYKMNSSCADILLFAAHRWPMSKPS
LVAESKDVFDQKASNKYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMI
GLDLAYNLHSAFGNWFPGSKPLLAQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYL
SSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIH
TSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIV
IKGSELQLPFQACLKIEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRAL
HVNNEKAKMLLKPDKSIVTEPHHIWPSLTDDQWMKVEVALRDLILSDYAKKNNVNTSALT
QSEIRDIILGAEITPPSQQRQQIAEIEKQAKDNTQLTAVTTRTTNVHGDELIVTTTSPYE
QSNYASKTDWRVRAISATNLYLRVNHIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQ
IAGYLYGISPPDNPQVKEIRCIAMAPQWGTHQQVHLPSALPDHDFLNDLEPLGWMHTQPN
ELPQLSPQDVTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPTGYEWGRANKD
TGSNPHGYLPTHYEKVQMLLSDRFLGFYMIPDNGPWNYNFMGVKHTVSMKYGVKLGTPRE
YYNEDHRPTHFLEFSNMEEGETAEADREDTFS
NT seq
7119 nt
NT seq
+upstream
nt +downstream
nt
atgtggaaccaagagatgtggagcaacaacgcgccgcctggcaccgctggggcagtcggt
ggaggagtaccgccgcctccaccaggcactgctggcggacttccgccaataatgcctccg
gggactaccggagcaggaccttctagtagcggagggccgcctccgccgccttcgtacact
gttctgccgactgaggctcagctcgaagagaaagctaggaaatggatgcagctgaattct
aagagatacagtgacaaacggaagtttggtttcgtggagacgcagaaagaggatatgcct
cccgagcatgttaggaagattattcgggaccatggggatatgtcttccaaaaaatatcgt
catgataaacgtgtgtaccttggagcacttaaatttgttccgcatgctgtttacaagctc
cttgagaacatgcctatgccttgggaacaagtgcgtgaagtgaaaattctgtatcacatt
actggtgctatcacatttgttaatgagataccatgggttgttgagccaatctatctagca
cagtggggtacaatgtggattatgatgcgacgagaaaagagagatcggaggcatttcaag
agaatgcgctttcctccttttgatgatgaggagcctccacttgactatgctgacaatctt
ttagatgttgatcctttggagccaattcaattggagttggaggaagaagaagattctgct
gtgtataactggttttatgaccataaacctctggtgaaaacaaagcttatcaatggtcct
agttaccgaaggtggcacctttctcttccaattatggcaacgcttcaccgtttagctggg
cagctgctttctgatttaactgatcacaattatttttatttgttcgatatggaatccttt
ttcacggctaaggcactcaacatgtgcattcctggtggcccaaagtttgaacctttgtat
cgtgacatggagaaaggagatgaagattggaatgaatttaatgacatcaataaattgatc
attaggtcacctctcaggacagaatacagaattgcattccctcatctctacaataacagg
ccaaggaaagtgaagctttgtgtatatcacactcctatgattatgtacataaaaactgag
gaccctgatctgcctgctttttattatgatcctctgatccatccgataacatctaaggag
aagaaagagaagagaattcttgaggatgatgatgatgattttgaattacctgagggtgtt
gaaccattgctcaaagacactcaaatatatacagatactactgcagctggtatatcgcta
ctgtttgccccacgtccatttaatatgagatctggccgcacacggcgggctgaagatata
cccctagtgtcagagtggtacaaggagcattgccctccatcttatcctgtcaaggtccgt
gtcagttatcagaaattgttgaaatgttttgtgctgaatgaactgcatcatagaccgcct
aaggctcagaagaagaagcacctgttccgttctcttcaggctacaaagtttttccaaact
acagaactggattgggctgaagctggtcttcaagtttgtaagcagggatacaatatgttg
aatctcctgattcacaggaagaatctgaactatcttcaccttgattataatttcaatttg
aagcctgtaaagactcttacaaccaaggaacgtaagaaatcacgctttggtaatgctttc
catctttgtcgagaaattctgcgtttgacaaagctagtagttgatgcaaatgtccagttt
cgtttggggaatgtagatgcatttcagttggcagatggcttgcagtatatattttcacat
gttggccaattgacgggtatgtatcggtacaagtaccggcttatgagacagatcaggatg
tgcaaagatttgaagcatttgatttattaccgatttaacactgggccggttggaaaggga
cctggttgtggtttctgggcaccaatgtggagggtgtggttgttctttctacgtggcata
gtgcctcttttggagcggtggcttggaaatctacttgcaaggcaatttgagggacgacat
tctaagggagtggctaaaactgttacaaaacagcgtgtggaaagtcactttgacttagag
cttcgtgctgcagttatgcatgatgtacttgatgctatgccagagggtatcaagcaaaac
aaagcaagaaccatcttgcagcatctaagtgaggcttggcgttgttggaaagcaaatatc
ccttggaaggtgcctggtttaccagttccaattgagaacatgatccttcgttatgtgaaa
tcaaaggctgattggtggacaaatgttgcccactataatcgggagcgtattagaagaggt
gcaactgttgacaagacagtttgtcgaaaaaatcttgggagattgactcgcctttggttg
aaggcagaacaggaacgacaacataactacctaaaggatggtccatatgtcacgccagaa
gaagcagtggctatatataccactactgtacattggttggagtctaggaaattttctcct
attccattcccaccattgtcttataagcatgatacgaaacttcttattctcgctcttgag
agattgaaagaatcttacagtgttgctgtaaggctaaatcagcagcaaagggaagagttg
ggtctcattgagcaagcttatgataatccacatgaggcattgtcaaggattaagcgtcat
cttctcacccagcgtgccttcaaagaagttggcattgagttcatggacttgtatagttac
cttattccggtctatgagattgagccactggagaagattactgatgcatatcttgaccaa
tacctatggtatgagggtgataagcgtcatctgttcccaaattggattaaacctgctgat
tcagagccaccaccactactagtctacaaatggtgccagggcattaacaacttgcaggaa
atatgggatactagtgaagggcaatgtgttgtcatgcttcaaactaaatttgagaaattt
tttgagaaaattgatttgaccatgctgaacaggcttctccggctggtactggaccataat
attgctgattatgtcactgcaaagaacaatgttgtgttgtcttataaagacatgagccac
acaaactcatatgggctaatacgtggtctccagtttgcatcttttgttgttcagtattat
gggcttgtgctggatcttttgcttttgggtttgactcgagctagtgaaattgctggtcca
ccacagatgcctaatgagttcattacttacaatgatactagagttgagaaacggcatccc
atccgtttgtactctagatacattgacaaggtgcacatattatttcgcttcactcatgaa
gaggcacgagatcttatccaacggtaccttactgagcatcctgatcctaataatgaaaat
atggtcggttataacaacaagaaatgctggccaagagatgcacggatgaggctcatgaaa
catgatgtcaatctagggagaagtgtcttctgggacatgaagaaccgactaccaagaagc
atcaccacgttggagtgggagaacagttttgtctctgtatacagtaaagataatcccaac
ctgcttttcagcatgtgtggatttgaagttagaatactgccaaagataagaatgactcag
gaggcatttagcaatacaagggatggagtatggaatctgcagaatgagcagacgaaggaa
cggacagctgttgcctttttgagggtggatgatgagcatatgaaggtgtttgagaatcgt
gtgaggcagatcctcatgtcttctggctctacaacatttacaaagattgttaacaagtgg
aatacagctcttataggtctcatgacatatttccgtgaagcaacagtgcacactcaggaa
ctactggatcttctggtcaaatgtgaaaataagatacaaactcgtatcaagatagggttg
aattcaaaaatgcccagcaggttccctcctgtaatcttctatacaccgaaggaaattggg
ggactgggcatgttatcaatgggtcacattttgatccctcagagtgatcttcggtatagt
caacaaacagatgttggtgtgacccatttcaggagtgggatgagtcacgaagaagaccag
ttgattccaaatctttacagatacatacagccatgggagagtgaatttattgattcacag
agagtttgggctgagtatgcattgaagaggcaggaagctcaggcacagaataggcgtttg
acacttgaagatctggaagattcttgggaccgtgggatacctcgaataaatactttgttc
caaaaggatcgtcacacccttgcatatgacaaaggatggagggtacggactgattttaaa
cagtaccaagttcttaaacagaatcctttctggtggacacaccagagacatgatggaaag
ctttggaacctgaacaactatcgaacagatgtaattcaagctcttggaggagttgaagga
attcttgagcatacgctatttaaaggaacatactttcctacatgggagggtcttttttgg
gagaaggcttcaggtttcgaagagtccatgaaatataagaaactgacaaatgcacagaga
tctgggcttaaccaaatccctaaccgtaggttcacactctggtggtcacctacaatcaat
cgtgccaatgtttatgttggtttccaagtgcagctggatttgacagggattttcatgcac
ggaaagataccgactctaaagatctcattgattcagatattccgtgctcacttgtggcag
aagatccatgaaagtgtggtcatggatctttgccaggttctagatcaggagttagatgca
ttggaaattgaaactgtgcagaaggaaacaattcaccccaggaagagctacaaaatgaat
agctcttgtgctgacattcttctatttgctgcacataggtggccaatgtcaaaacctagt
cttgtggctgaatcaaaggatgtctttgaccaaaaggcaagtaataaatactggattgat
gtgcagcttagatggggtgactatgattctcacgacattgaacgatacacccgggcaaag
tttatggattacacaacagacaatatgtctatttatccatcaccaactggtgtaatgatt
ggacttgaccttgcttacaacttgcattctgcatttggaaactggttccctggatcaaag
ccattattggctcaagcgatgaacaagattatgaagtcaaatcctgcactatatgttctg
agggaacggataaggaaagggttgcagttatattcttcagaacctacagagccatatcta
tcatcccagaactatggagaaatattcagcaatcagataatttggtttgttgatgacaca
aatgtgtatcgtgtgactattcacaagacctttgaagggaatttaaccacaaaacctatt
aatggagcaattttcatttttaacccaaggacagggcaattgtttctaaaggtcattcac
acaagtgtttgggcaggacaaaagcggttggggcagcttgccaagtggaaaacagctgaa
gaggtggctgctttggtgcgttctttacctgttgaggaacaaccaaaacaaattattgtg
actcgtaaaggaatgcttgatccattggaggttcacttgcttgattttcctaatattgtt
atcaaaggaagtgagttacagctacccttccaggcttgtcttaagattgagaagtttggt
gatctgatactaaaagctactgaaccacaaatggttttgttcaatatatatgatgattgg
ttgaaaagcatctcctcctacacggcattctccagacttatcctcatcttacgtgcactt
catgtaaacaatgaaaaggctaagatgttactcaagcctgacaagtcaattgtcactgag
ccacaccatatctggccttctcttaccgatgaccagtggatgaaggttgaggttgctctc
agagacctcatactttctgactatgcaaagaagaacaatgttaacacatcggcattgact
cagtctgagatccgtgatattatacttggagctgagattactcccccttcacagcagcgg
caacagattgcagagattgagaaacaggcaaaggataacactcagttgacagcagtcacc
acaaggaccaccaatgtccatggtgatgaattaattgtcactacaacaagtccttatgag
cagtctaactatgcctctaaaactgattggcgtgtcagagcaatttctgccacaaacctt
tatctccgagtgaatcatatttatgtgaattcagaggacataaaggaaactggctatacg
tacattatgccaaaaaatattttgaagaagttcatatgtattgctgatctccgaacacaa
attgctggatatttgtatggtataagtcctccagataatccccaggtgaaggaaattcga
tgtattgccatggcaccacagtgggggacccatcagcaagtgcatctaccgtctgctctt
ccagatcatgacttcttgaatgatttggagcctttgggatggatgcacactcaaccgaat
gaacttccacaattatcaccacaagatgtcacttctcatgcaaggattctagagaacaac
aagcaatgggatggagagaagtgtatcattttgacatgcagttttacacctggatcatgc
tcattaactgcttacaagttgacacctacaggatacgagtggggccgtgctaacaaggac
acaggaagtaaccctcatggttacttaccaactcattatgagaaggtccaaatgcttctg
agtgatcgtttcctcggtttctacatgattcctgacaatggcccatggaattacaacttc
atgggggtgaaacacacagtcagcatgaagtatggggtaaaactaggcaccccgcgggaa
tactataatgaagatcacaggccaactcatttcctggagttcagcaacatggaggaaggt
gagactgcagaggctgatcgagaagatacattttcttaa
DBGET
integrated database retrieval system
