Ipomoea nil (Japanese morning glory): 109165497
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Entry
109165497 CDS
T04663
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109165497
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ini03021
]
109165497
03019 Messenger RNA biogenesis [BR:
ini03019
]
109165497
Transcription machinery [BR:
ini03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109165497
Messenger RNA biogenesis [BR:
ini03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
109165497
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
zf-CCCH_2
Torus
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
109165497
NCBI-ProteinID:
XP_019169838
LinkDB
All DBs
Position
Un
AA seq
678 aa
AA seq
DB search
MDDGEGGLSFDFEGGLDTGPTHPTASVPVLQSSDQNAAIAGPNSINPSNVASAPAGAAPD
GGGMGGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRIYGECREQDCVY
KHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQQLVSYNYGYSNKFN
QNRNANFAPQAEKSQNAQGPTGASQAIKTSTTESAFPQQQPNQQVQQVQQQGSQGQTLST
GQQNQTNRSAIPLPQGTSRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSMENV
ILIFSVNRTRHFQGCAKMTSRIGGATKGGNWKHEHGTAHYGRNFSVKWLKLCELSFQKTR
HLRNPYNENLPVKISRDCQELEASVGEQLASLLYLEPDSELMAISLAAESKREEEKAKGV
NPERGNENPDIVPFEDNEEEEEEESEEEDESFGQAFGPVALGRGRGRGTAWPPMMPLGRG
AWPLPGNPGMRGFPPGMMGEGFPYAGVTPDGFPMDVFGMGPRPFAPYGGPRFSGDMMFHN
RPPSGGFGMMMGPGRGPYMGGMGPGSAGPPRPGQPVGMAPSFAPPPSQALQNSYRGKRDP
KAPGSDRNDRFSSGSDQGKDKEMASSAGGPDDKAPYLQNSLRNDESESEDEAPRRSRHGE
GKKRRGSLEADATTPPEK
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggacgacggagaaggaggtctaagcttcgacttcgagggaggtctggatacgggcccc
actcaccctactgcctccgtgccggtgctccagtcatcggaccagaatgctgcgattgct
ggtccgaactctattaatccctcaaacgtcgcttcagcccctgccggcgccgcccccgac
ggtggtggaatgggcggaaaccgccggagcttccgccagactgtgtgccggcactggctg
cggtctctctgcatgaaaggcgatgcctgcggcttcctacaccagtacgacaagtccagg
atgcccgtatgccgcttcttccggatttatggcgagtgccgcgaacaggactgtgtttat
aagcataccaatgaagacatcaaggagtgcaacatgtacaaattgggattttgtccaaat
ggtcctgactgccggtataggcatgctaaacttcctggacctccacctcctgtagaagag
gttcttcaaaaaattcaacaattagtatcctacaactatggttactcaaacaagtttaac
cagaaccggaatgcaaattttgcaccccaggcagaaaaatctcagaatgcacagggacct
actggtgcaagtcaagccattaaaacttcaactacagaatcagcttttcctcaacagcag
ccaaatcaacaagttcaacaggtccagcaacagggcagccagggtcaaacactttccact
ggacagcaaaatcaaaccaataggagtgcaatacccctacctcaaggaacatctaggtac
tttatagtcaaaagttgcaatcgtgagaatctggaattgtcagtacaacaaggagtatgg
gcaactcaaagaagcaatgaggctaaactaaatgaagcatttgattctatggaaaatgtc
attttgatcttttcagtgaatcgaactagacactttcagggttgtgcaaagatgacatcc
agaattggtggtgctactaaaggaggaaattggaagcatgagcatggaactgcacattat
ggacgaaacttttctgtcaaatggttaaagctatgtgaattgtccttccagaagactcgt
catttgagaaacccatacaatgagaacttaccagtgaagattagcagagattgtcaagaa
ctagaggcctctgttggggagcagttggcttccctgttgtatcttgagccagacagtgaa
cttatggcaatctcactcgcagcagaatcaaaacgagaggaagagaaggcaaagggtgtg
aatcctgagagagggaatgagaatccagatattgtaccatttgaagacaatgaagaagag
gaggaagaagaaagtgaggaagaggatgagagctttggtcaagcttttggaccagtggcc
ctaggcagaggaaggggccggggaacagcttggcctcctatgatgcctttaggacgtggt
gcctggccactccctggaaatcctgggatgcgggggtttcccccagggatgatgggtgaa
gggtttccctatgctggagtaacacctgatggttttcctatggatgtatttggcatgggc
ccacgtccttttgctccatatggtggtccaaggttctccggtgatatgatgtttcataat
cgtccgccaagtggtggatttggaatgatgatgggtccaggaagggggccatacatgggt
ggaatgggtcccggatctgcaggcccaccgagacctggtcaaccagttgggatggctcca
tcattcgccccacctccatcacaagccctgcaaaattcttatcggggtaaaagagatccg
aaagcaccaggtagtgatagaaatgatagattcagttcagggtcagatcaaggtaaggat
aaagagatggcaagttcagccgggggacccgatgacaaagctccttatctgcaaaatagt
cttagaaatgacgaaagtgaaagcgaggatgaggcaccaagaaggtcaaggcacggtgaa
ggaaagaagaggcgtggtagcttggaggcggatgcaacaactccccccgagaaataa
DBGET
integrated database retrieval system
