Ipomoea nil (Japanese morning glory): 109165733
Help
Entry
109165733 CDS
T04663
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini04120
Ubiquitin mediated proteolysis
ini04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
109165733
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
109165733
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ini04121
]
109165733
Enzymes [BR:
ini01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
109165733
Ubiquitin system [BR:
ini04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
109165733
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
109165733
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
WDR55
Beta-prop_EML_2
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
zf-C3HC4_2
Beta-prop_EIPR1
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_HPS5
Beta-prop_WDR19_1st
zf-C3HC4
Beta-prop_EML
zf-C3HC4_3
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
WD40_RFWD3
WD40_like
zf-RING_2
Beta-prop_WDR75_1st
zf-RING_UBOX
zf-C3HC4_4
Beta-prop_IFT140_1st
Beta-prop_WDR35_TULP_N
U-box
Prok-RING_4
Beta-prop_DCAF12
zf-RING_5
RING_XB3-XBAT31
WDR90_beta-prop_4th
DUF1664
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
109165733
NCBI-ProteinID:
XP_019170183
LinkDB
All DBs
Position
Un
AA seq
674 aa
AA seq
DB search
MGGGSRSALGALVPSVKLEPLTSEESPPETVAQAQQMAIPAPEKEEAEEQGLDKDVLCPI
CMQVIKDAFLTPCGHSFCYMCIITHLKNKSDCPCCSHYLTATQLYPNFVLNKLLTKTTAR
QIAKTALPVEQLRQAIEQGCDVSAKELESLLSLLSEKKKKMELEEAETNMQILFEFLQCL
RKQKLDELHETQKDLQYIKEDIRSVEKYRIELYRATGRCSSKMRILGDESSAKFPAFLDK
QSYGTTTNVPNAQGECIAVSNSVQTQITKAPFDSQLIQREIAQNGSDSQHAVARRRRVHA
QFSDLQDCYLQKRRHWASNSQKQEERVSNGTKEGYNAGLADFQSVFSTFTRYSRLRVVAE
LRHADLFHSANIVSSIEFDRDDELFAIAGVSRRIKVFEFASVINEPAADMQCPIAEMPTR
SKLSCLSWNKYKKNYIASSDYEGIVTVWDVTTRQSVMEYEEHEKRAWSVDFSRTEPSMLV
SGSDDCKVKVWCLRQEASVLSIDMKANICSVKYNPGSSFHVAVGSADHNIYYYDLRNISQ
PLHIFSGHRKSVSYVKFLSNNELASASTESSLRLWDVKDNIPLRTFRGHTNEKNFVGLTV
NSEYIACGSETNEVFVYHKAISKPAAWHSFGSDMNEADAEIGSYFISAVCWKSDSLTMLS
ANSQGTIKVHVLAA
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggggggaggatcaaggagtgcactaggggcgttggtgccgtcggtgaagctggagccg
ttgacttcggaagaatcgccgccggagacggtggctcaggctcagcaaatggcgattccg
gcgccggagaaggaggaggcggaggagcaggggctggacaaggacgtgctgtgtccgata
tgcatgcaagtgataaaggacgcgttcctgaccccgtgcggacatagcttctgctacatg
tgtatcatcactcatcttaagaacaagagcgattgcccttgttgctctcactaccttact
gcaacacagctctatcctaatttcgtcctcaataaattattgacgaaaaccactgctcgt
caaattgctaaaactgcactacctgtggaacagcttcgccaggcaatagaacagggatgc
gacgtgtcagctaaggaacttgagagcctcttatctcttctttctgagaagaaaaagaaa
atggagctagaagaagctgagacaaacatgcagatcctattcgaatttttgcagtgctta
aggaagcaaaaacttgatgagcttcatgagactcaaaaggacctccaatacattaaagag
gacataaggtctgtggagaaatatagaatagagttgtatcgagcaacgggtagatgttca
tcaaaaatgaggatactgggagatgagtcttcagcaaaattccctgcatttcttgacaaa
cagagttacggcactactactaatgtccctaatgcacaaggagaatgcattgcagtctcc
aacagtgttcagacccagataacaaaagctccttttgattctcaactaatccaaagagag
attgcacagaatgggtcagattcacaacatgctgtagcaaggaggaggcgggtccatgcg
cagttcagtgatctacaagactgttatttgcaaaaacggagacattgggccagcaattct
caaaaacaggaagaaagggtgtcaaatgggacaaaagagggatataatgcaggacttgca
gatttccaatctgttttttcgacttttacacgatacagtcgattgagagttgttgcagag
cttaggcatgccgatctattccactcagccaatatagtttcaagtatagaatttgaccga
gatgatgaactatttgctatagcaggagtatcaaggcgtatcaaggtctttgaatttgca
tctgtgataaatgaaccagcagcagatatgcaatgtcctattgcagaaatgcccacccga
tccaaacttagttgtttgagctggaacaagtacaaaaaaaattacatagcaagcagtgac
tatgagggcatagttactgtgtgggatgtgactactcgtcagagtgtcatggaatatgag
gagcatgaaaaacgagcatggagtgttgacttttctcgtactgaaccatctatgctggtt
tctggaagcgacgattgcaaggtcaaagtttggtgcctgaggcaggaagcgagtgttcta
agcattgacatgaaagcaaatatatgttctgtcaagtacaatccaggatccagtttccat
gtggcagtgggttctgctgaccataacatttattattatgacttaagaaatattagccag
cccctgcatattttcagtgggcacaggaaatctgtttcatatgtaaagttcttgtccaac
aatgaactcgcttccgcatcaactgagagttcattgcgcttgtgggatgttaaggacaat
attccactgcgcacttttagagggcatacaaatgagaagaattttgtcggccttaccgta
aatagcgaatacatcgcatgcggtagcgaaacaaacgaagtttttgtttatcacaaggca
atatctaagcctgcggcttggcacagttttggttctgatatgaacgaggctgatgcagaa
attggatcatacttcattagtgcggtttgctggaaaagcgacagcctgactatgttaagt
gcaaacagtcaagggactataaaagtgcacgtacttgctgcttga
DBGET
integrated database retrieval system
