Ipomoea nil (Japanese morning glory): 109167274
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Entry
109167274 CDS
T04663
Name
(RefSeq) zinc finger CCCH domain-containing protein 49-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109167274
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ini03041
]
109167274
Spliceosome [BR:
ini03041
]
Complex B
Other components
Prp19-related factors
109167274
Complex C
109167274
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_10
zf-CCCH
zf-CCCH_12
zf-CCCH_3
zf-CCCH_4
zf-CCCH_PARP12
RRM_3
RRM_occluded
RRM_YTH1
Motif
Other DBs
NCBI-GeneID:
109167274
NCBI-ProteinID:
XP_019171829
LinkDB
All DBs
Position
Un
AA seq
490 aa
AA seq
DB search
MAHRLLRDVEADGWERSDFPIICESCLGDSPYVRMTKADYDKECKICTRPFTVFRWRPGR
DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE
EHDRRARAGIDYESSYGKVRPNDTILKLQRTTPYYKRNRAHVCSFYVRGQCTRGLECPYR
HEMPETGELSQQNIKDRYYGVNDPVALKLLSKAGEMPSLEPPDDESIKTLYVGGVDARIT
EQDLRDQFYAHGEIESVKMVLQRGCAFVTYTAREGAERAAEELANKLVIKGLRLKLLWGR
PQAPKPEFEITDEARQQATVAHSGLLPRAVISQQQNQPLPLPGGSQDQPPPPMPYFNIPP
MPQPDRALYPSMDPQRMGAVVPSHEGAASGSGENRSGPDKQPPHGHHFAYPPGPPPPQGQ
FYPPYYPHYGYIPPPPPSYQQYPPPPYQATVPPPPPGGSQAPPMQQSQPGAGQQRPVPQG
PGQQEPGQQS
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atggctcataggctattgagagatgttgaagctgatggatgggagcgatctgactttccg
attatatgtgagtcgtgtcttggtgacagtccatacgttcgaatgactaaagctgattat
gacaaggaatgcaagatttgcacccgacccttcactgtttttaggtggaggccaggtcga
gatgctagatacaagaaatctgagatatgtcaaacctgcagcaagttgaagaatgtttgc
caagtttgtcttctggatcttgaatatggattgccagttcaggttcgagacactgcgctt
agtatcaattccaatgatgccattccaaagagtgatgtgaatagagaatactttgctgag
gagcatgaccgcagggccagagccgggatagattatgaatcttcgtatgggaaggtccgt
ccaaatgatactattttgaagcttcaacgaactaccccatactacaagagaaatcgagct
catgtttgcagtttttatgttcggggtcaatgtacaagaggtttggagtgtccttatagg
catgagatgcctgaaacaggggagctgtcacaacagaatattaaagaccgctactacggg
gtaaatgatccagttgcattgaagttgctcagcaaggctggtgaaatgccttctctggag
cccccagatgatgagagcattaaaaccctctatgtgggtggggttgatgcaaggatcact
gagcaagaccttagggatcagttctatgcacatggtgaaattgagtctgtaaagatggta
ttgcagcgtgggtgtgcttttgtaacttacacagccagagaaggagcagagagggcagct
gaggaacttgcaaacaagctggtaataaagggcctgaggctaaaactactctggggaaga
ccacaggcaccaaagcccgagtttgagatcactgatgaagcaagacagcaggctactgtg
gctcatagtggtttgttgccaagggctgtgatatcacagcagcagaaccagcctctcccg
ctccctggtggtagccaggaccaacctccaccacctatgccttacttcaacattccacca
atgcctcagccggacagggcattgtatccttctatggatcctcaaagaatgggagccgtt
gttccatcacatgaaggtgctgcttcagggtcgggcgaaaatagaagtggtcctgataag
caacccccacatggacaccattttgcttatccgcctgggccaccaccaccccagggccaa
ttttacccaccttattatccacactatgggtatatcccacctcccccaccgtcttatcaa
cagtaccctcctccaccttatcaggctacagtgcctccaccacctcccggcggcagccag
gcaccacctatgcagcagtcacagcccggagcaggccagcaaaggccagtaccacaagga
ccaggacaacaagaaccgggacaacagtcttaa
DBGET
integrated database retrieval system
