Ipomoea nil (Japanese morning glory): 109168998
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Entry
109168998 CDS
T04663
Name
(RefSeq) small subunit processome component 20 homolog
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
ini
Ipomoea nil (Japanese morning glory)
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ini03009
]
109168998
Ribosome biogenesis [BR:
ini03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
109168998
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
Cas_Csn2
Motif
Other DBs
NCBI-GeneID:
109168998
NCBI-ProteinID:
XP_019173420
LinkDB
All DBs
Position
Un
AA seq
2683 aa
AA seq
DB search
MATTSDAMAVKSLNKSSGRRRFVFKNFSQRIQDIDIDVYRSLDPLKTEPSEGSSFFRDCL
VQYRELNTAEDFISFYEQMLPLVQTLPQIVLQKELILSELLSRLNMKGRLSLEPILRLIT
ALSRDLVDDFLPFLPRVADSLVVLLKNGADREPEIIEQIFTSWSYIMMYLQKYLTKDVVY
VLRVTVKLRYFPKDYVQEFMAESVSFLLRNASVKQLKKGIQNLMIEVVKKPSLTRKSGIS
SLLWYAMRGTSSRFHSRADQVLRLLLDNSLYSIDDHFNGGPETVLEVVIGAFQRLCEELD
AKQLDLMWDCLFKEITNSVANGHSMHLCRLLSLLISTVQKEYVEKISDYQPMLEVISLLV
QTYIVPSSTLEALNPTSELVDKILSLMLCVVDGLHKTNNLSALSCTSLQWAPVFDSRNKS
LATFVKDFVSKDPSILYFFRANIISALNDLLEIPEDEIIYLLHIFCERLQVQQQNFLDGI
PNEKILRICSFLDKAINFWIQLIKDAVNKDFSSAELTEDRLAVLWGTIGCYPYMIDAKRN
PSLLMDLIYAIDELLTVKLDLCRKTWQCLIGATLGSFLKILDNQNAAFLESEVSKLLDLA
RRHRMCSQILSAVADILDSIYGKQANTPIKRYHPELAASKVVGALDIFSENLCNCDKEIR
LSTLRILCHYEPLCDGYSTNGHAEKKRRIDDSQICAVDDQQNNVVQLLLSVEEMPLSIAT
SRKVILLISKIHMSLSAARIDERYIPVALNGVIGIFHNRFSHLWGPASDCTSVLLGQYFG
ILWDIFVKYLDYCLSIVLGHDDQAYKSNTESFGKDDADLIGLFCSYRCSMSDSTPSATVL
SLLIQSLQRVPSVVESRSRQIIPLFLKFLGYNVDDLVSVESYNILNCKGKEWKEVLKEWL
NLFKLMKNPKAFYQSQFFKDVLQYRLLDENDAELQMKVLDCLMNWKDTFLLPYDQHLKNL
ISAKNLREELTTWSLSRDSNLIDAHHRHFLVPTVIRILAPKVRKLKSLASRKHASVSHRK
AILCFLAQLDVEELPLFFSLLVKPLVRRDAGFDANVESLWTNPQALNDEYNSFTVFKHFT
TNIISNISWKKRYSFLHVIEDTVAVFDEAHISPFLNLLMECISYLLESCALTLGNTDSSL
ILANCSNATESETETQTAMKQSKELRSLCLRIISFILNKYENHDFSSKFWDSFFKSVKPL
ISGFKQEGASSEKPSSLFSCFLAMSRSYKLVPLLYREKNLVPDIFSMLAITTASKAIVCS
VLKFIENLLTLNNEQSGEDDPIKMLLLPHLDVLVSSLHNLFVNDGPIKRKLAKYPGENEL
NVFKLLSVYVEEPLAARKFVDVLLPLLSKKSHACDICVDTLQIIKNISRPLGNESIKKIL
KSISPLLISGDLDVRGSVCDVLDALARNDSSLLNLAKLLRELNATSASDMGDLDYDTIIS
AYGKLNVDFFHNVEEEHALIILSNSIRDLSSEDLILRQSAFRLLSSFVEYSGQILEQEMQ
PERGCSGSWVMYIINNFLLKHMGNAMNKEGAAQKLWIGLLREMVLKLHKMVEFKTYTVLC
SEDPEQDFFNNVVHLQRHRRARALSRFGNVVASGSFSERVMNRVFVPLLFNMLLDLQNGK
GENIRNACIEALASISKWMDWNAYYGLLVRCFREMTLKQDKQKVLMRLICTILDQFHFSE
ANFVHEIEGSMEHMSDPDTSKKISAVSNSFTSNGDLSKIQICLKKDVLPKVQKFLMSDSE
NVNVTISLVALKVLKLLPGDIMELQLPSIIHRISNFLKNRLESVRDEARSALAACLKELG
LEYLQFIIKVLRGTLKRGFELHVLGYTLNFILTKFLQNPSSLNLDYCLEDLLSVAESDIL
GDVSEEKEVEKIASKMKETKKQKSYETLKLIAQNITFKTHALKLLLPVTVHLLKQLTPKV
KTKLENMLNHISSGIQCNPSVNQKELFVFAYGLIKDGLKDAHFGHEDTLISDEGKKNKDE
VSAENTNSNRLISVDRRYSYLITEFAVGILQNYLRNMELDKGDEKLLSMLDPFVRLLGDC
LSSKYENIIFAALKCLYSIVRLPLPTLENEANRIKNSLLDIAQGSVNSSTPLMESCIKLL
TVLLQNTKMTLSEAQLQSLIQFPFFVDLERNPSFVALSLLKAIIKKKLVAPEIYDVVKGV
AELMVTSQVESIRRKCSKIFLQFLDCYPISVKRFQQHLDSLLANLRYEHSTGREAVLEML
RAIIVKIPDRIQEQSQTIFMHLVICLANDQDNKVRSMAGVAIKLLAENMKKFGSLASIIE
YSFSWYRGEKQHLWSSAAQVLGLLVEVMGNSFQEYVADVLSVTKKILQSACAALANRQLG
LSDEVVPLWKEVYYSLVLLEKIHNQFTALCFTKELEDLWETICDFLLYPHMWVRSISVRL
IDLYFARVTKACNENQAVLGSFFLMEPSRLFQIAVSLICQLNVQLVKDADEALITKNLVF
AICGIQALLVHGSGHSAFGPEEQSRFLKAFNLLDPKKGRSIFTAFSSYYSAQGIEQQTED
QGSMIVSCLLKRMGKIPIQMEALQTRIVFNCFKSISIKLLDQSRVLSSEDEVDSQSYAYQ
ILLPLYKVCEGQAGKVISDDVKQLAQEVCESIRDVLGMQSFVQVYSQIRKKLKAKRDKRK
QEEKLMAVVNPMRNAKRKIRIAAKHKANKKRKIMSMKMTRWMQ
NT seq
8052 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaacttccgatgctatggccgttaagtctctcaacaagagctccggccgccgc
cgctttgttttcaagaatttttcgcagcgaattcaggacattgatattgatgtataccgg
agtcttgatcctctaaaaactgagccttcagaagggtcctcattttttcgtgactgtctt
gtgcaatacagagaattaaatacagctgaggattttatctcgttttatgaacaaatgttg
cccttggtacaaactctacctcaaattgtacttcagaaggaattgatactctcagaactt
ctatctagattgaacatgaagggaagactatctcttgagcccattttaaggttgattaca
gcattatctagagatctggtggatgactttttaccctttcttccgagagttgctgattct
ttggtggttcttctaaaaaatggtgctgatagagaaccagaaataattgagcagattttt
acatcatggtcatacattatgatgtacctacagaaataccttaccaaagacgtagtttat
gttctaagggttactgtcaaattgagatacttccccaaagactatgtgcaagaattcatg
gcggagtcagtatcattcttattgaggaatgcatctgtcaagcaacttaaaaaaggaatt
caaaacttaatgattgaagttgtgaagaaaccatcattgacaagaaagtctggaatcagt
tccttactgtggtatgccatgaggggaacatcatcgaggtttcattcaagggcagatcaa
gtattgcgccttctgcttgataactccctatatagcatcgacgatcattttaatggaggt
ccagaaactgttcttgaagttgtcattggtgcttttcagagattgtgtgaggaattggat
gctaagcagctggacttgatgtgggattgcttatttaaggagataactaatagtgttgct
aatggtcattctatgcatctttgccgacttttatcgctgctcatttctactgtgcaaaag
gaatatgtggagaaaatctctgattaccaaccaatgctagaagtgattagtttgcttgta
caaacttacattgtgccatcatccaccttggaggcactgaacccaacatcagagcttgtt
gataaaattttgtcattgatgctttgtgttgttgatggtctccacaaaactaataactta
tcagctctctcctgtacttcgttgcagtgggctcctgtgtttgactcgaggaataaaagt
ttggctacatttgtcaaagattttgtatcaaaggacccctctattctctattttttcaga
gctaacattattagtgccttaaatgatttactagagattccagaggatgagattatatat
ttgctgcacattttttgtgagaggctacaagtacaacaacagaatttcttagatggaata
cccaatgagaaaattttgagaatttgcagtttccttgataaagctataaatttttggatt
cagctaatcaaagatgcagtgaacaaggatttttcctctgctgaacttacagaggatagg
ttggcagtcctatggggaactattggctgctatccatacatgattgatgccaaacgaaat
ccttcactgcttatggacttaatatatgctatagatgagcttttaacggtgaaattggat
ttatgtagaaaaacttggcagtgcttgattggtgccactttgggttcttttcttaaaatt
ctggacaatcaaaatgctgcttttctggagtctgaagtgagtaagcttttagatcttgca
agaaggcacagaatgtgctctcagatattatctgcagtggctgatattttggattctatt
tatggaaaacaagccaatactcctattaaacgatatcatccagagcttgctgcaagtaaa
gtggtgggtgccctggatatattctctgaaaatttgtgcaactgtgacaaggaaatccgc
ctatcgactttaagaatcttgtgccattatgaacctttatgtgatggatattctacaaac
ggacatgctgagaaaaaaagaagaattgatgattcccagatatgtgctgtagatgaccag
cagaataatgttgttcagctcctcctgtcagttgaagaaatgcctctttcaattgccacc
agcagaaaagttattctgcttatctctaaaattcatatgagtctatctgctgcaaggata
gacgaacggtatatacctgtggctttgaatggtgtaatagggatcttccacaacagattt
agccatttatggggtccagcttcggactgcacttctgtcctacttggccaatactttggg
atactttgggacatatttgtgaagtaccttgattactgcctctctatcgttttgggtcat
gatgatcaagcttataagagcaataccgagtcatttggcaaggatgatgctgatctgatc
gggctgttctgctcttatcgttgttcaatgtcagatagcactccatctgcaacagtttta
tctttattgattcaatctttacagagagttccatctgttgttgaatctcgttctcggcaa
ataatacctttattcttgaaatttctagggtacaatgttgatgatcttgtgagtgttgaa
tcatataatatactgaattgcaaagggaaggagtggaaggaggttcttaaggaatggcta
aacttattcaaattaatgaaaaatcccaaggcattttaccagagtcaatttttcaaagac
gtcttacaatataggcttcttgatgaaaatgatgctgagttgcagatgaaagttcttgat
tgcctgatgaattggaaagatacctttttgctcccttacgatcagcatctaaaaaatctg
atcagtgcaaagaatttgagagaggagctcacaacttggagcttgtcaagggattcgaat
ctcattgatgcacatcatagacattttcttgtgcctactgtcatccgcatactggctcca
aaagtgaggaagttaaaatctcttgcctcaaggaagcatgcaagtgtaagtcatcggaag
gcaattctttgctttttagctcagcttgatgtggaagagctgccactcttcttttcccta
ttagtaaagcctcttgtaagaagagatgcaggttttgatgcaaacgttgagtcactctgg
actaatcctcaagccttaaatgatgaatataattcatttacagtctttaagcattttact
acaaatatcatcagcaacatttcctggaagaagagatacagcttcctgcacgttattgaa
gatactgtagctgtttttgatgaagcacatattagcccgtttcttaatctgttaatggaa
tgcatttcatatttgttggaaagctgtgcattgactcttggcaacacagatagtagtctg
attcttgctaattgtagcaatgccactgagagcgaaactgagacacaaacagctatgaag
cagtcgaaggagttgagatctttgtgcttgaggatcatttcatttattcttaataaatat
gaaaatcatgattttagttccaaattttgggattccttttttaagtctgtgaaaccatta
atttctggtttcaagcaggaaggtgccagtagtgagaaaccaagctcattattttcttgc
tttcttgcaatgagtagaagctacaaacttgtaccattgttgtatagagagaagaacctt
gttcctgatattttttctatgttagccatcacaacagcatccaaagctattgtttgtagt
gttcttaagttcattgagaaccttttgactctgaataatgaacagtctggtgaagatgac
cctataaagatgttactgcttcctcatcttgatgttcttgtgtccagtttgcataatctt
tttgtgaatgatgggccaataaaaaggaaactcgccaaatatcctggagagaatgagctg
aatgtttttaagctgttatccgtttatgtagaggaacctttagctgcaaggaaatttgtt
gatgttttgcttccacttttatcaaagaaatctcatgcttgtgatatttgtgtggacaca
ctccagatcatcaagaatatatcaagacctttagggaatgaaagcattaaaaagattctc
aaatcgatatctccacttctcatttctggtgatcttgatgtccggggttctgtttgtgat
gttcttgatgctcttgccagaaatgattcatcattacttaatttggcaaaacttcttcgt
gaactgaatgcaacctctgcttcagatatgggtgatcttgattatgatactattatttct
gcttatggaaagttgaatgtagatttcttccacaatgttgaagaagaacatgcattaatt
attttgtcaaattctatacgtgacttgtcatctgaggatttgattctcaggcagagtgca
tttagattgttgtcatcatttgttgaatattctggtcaaattcttgaacaagaaatgcaa
cctgagcgagggtgttctggatcatgggttatgtacataataaacaactttctcttaaag
cacatgggaaatgcaatgaacaaagaaggcgcagctcaaaagctatggattggtctactg
cgtgaaatggttttgaagcttcacaagatggtggaattcaaaacatatactgttctctgc
agtgaagatccagaacaggatttttttaacaacgttgttcacttacagaggcacagaagg
gcaagggctctatcacgttttggcaatgttgttgcttctgggagtttctctgagcgtgtt
atgaatagagtttttgtgccactccttttcaatatgctattagatttacaaaatgggaag
ggagaaaatattagaaatgcatgtatagaagctcttgcatcaatatctaaatggatggac
tggaatgcatactatggattacttgtcagatgtttccgtgagatgactctgaaacaagac
aaacaaaaagtgttaatgcggcttatctgcaccattctagaccaattccatttttcagaa
gccaattttgttcatgaaattgaaggttctatggagcatatgtcagatccagacactagt
aaaaaaatatctgcagtgtcaaactcctttactagcaatggtgacctgtctaagattcag
atttgtctcaagaaagacgtgcttcctaaggtacagaaatttttgatgtctgattctgaa
aatgtcaatgtaactatcagtttagttgccctcaaggtgctgaagttacttcctggtgac
atcatggaattgcaacttccaagcattatacatcgtatttctaacttccttaagaatcgt
ttagaaagtgtccgagatgaagctagatctgccttggcagcttgcttaaaagagcttgga
ttggaatacttgcaatttatcatcaaagtcttgcgaggcactttgaaaagaggatttgaa
ttgcatgttctgggatacacattgaattttatattgacaaaatttcttcaaaatccctct
agtctaaatttggattattgtctagaagatcttctttctgttgctgaaagtgatatactt
ggcgatgtgtcagaagagaaagaggtagagaagattgcttcaaaaatgaaggagactaaa
aagcagaagtcctatgagaccctcaagttgattgcccaaaacatcacattcaaaacccat
gccttgaagcttcttttgcctgttactgtgcatctactgaagcagctgactccaaaagtg
aaaacaaaattggagaacatgttgaatcatatatcttctggtatacaatgcaatccatct
gtgaatcagaaagagctctttgtgtttgcatatggtctcatcaaggatggcttaaaggat
gcacattttggccatgaagacacactcatctcagatgaaggcaaaaaaaataaagatgaa
gtgagcgctgaaaacactaattcaaatagattgatcagtgttgatcggcgatattcttat
ctgattacagaatttgccgttgggatactgcagaactacctaaggaacatggagctagac
aaaggggatgagaagttgttatcaatgttagacccttttgtcaggctattaggtgattgt
ttgagttcaaaatatgaaaatatcatatttgcagctctaaaatgcctatattcaatagtc
aggctgcctttgccaacccttgaaaatgaagctaaccggataaagaattcactgttggat
attgcccaaggttcagtaaattccagtactccattgatggaatcatgtattaaattgtta
acagtgcttctgcaaaataccaagatgacactttctgaagcacagcttcaatcacttatc
caattcccattttttgttgatcttgaaagaaatccctcatttgtggctctctctctgctg
aaagctataataaagaaaaagttggtggctcctgaaatctatgatgtcgtcaaaggtgtt
gcagagttgatggtgaccagtcaagttgaatcaattcgcaggaaatgcagtaagattttt
ctacagttcttagattgctatccaatttcggtgaaacgctttcagcaacatcttgattcc
ttacttgcaaacctgagatatgaacattcaactggtagagaagctgttcttgaaatgctt
cgtgctatcatagtgaaaattccagacagaatacaagagcagtctcagactatttttatg
catttggtaatatgcttggctaatgaccaagataacaaagtcaggtctatggctggtgtt
gccataaagctacttgcagagaacatgaagaaatttgggtcacttgcgtctattattgaa
tatagtttttcttggtataggggtgagaaacaacatttatggagttctgcagcacaggtt
ttgggattattggtggaagtgatgggtaacagttttcaggagtatgttgctgatgtttta
tctgttacgaaaaaaatcttgcaatctgcttgcgctgctcttgcgaatagacaactgggc
ttatctgatgaagtagttcccctctggaaggaagtatactattcattggttctattagag
aagattcataatcaatttactgcattgtgcttcacaaaggagcttgaggatttgtgggaa
acaatctgtgatttcctcttatatccacacatgtgggtgcgcagcatatcggtccgcctt
atagatttgtactttgccagagtgaccaaggcttgcaatgaaaaccaggcggtgctgggg
tcattcttcttaatggagccaagtagactgttccaaattgccgtttctctcatttgccaa
ctgaacgtacagctggtcaaagatgctgacgaggccctaatcacaaaaaaccttgtgttt
gcaatttgcggtatacaggcattactagtacatggtagtggtcattctgcctttggccct
gaggagcaaagccgcttcctcaaagcttttaatttacttgatccaaagaagggaagaagc
atctttacagctttcagctcttattatagtgctcagggcattgaacagcaaaccgaggac
caaggctctatgatcgtctcctgtctgcttaagagaatggggaagattcctattcagatg
gaggcactgcagacaagaatcgtcttcaactgtttcaaatcaatttctatcaaacttctt
gaccaatcaagagtattatcgtctgaagatgaggttgacagccagagctatgcttatcaa
atcctgctgcctctatacaaagtttgtgaaggacaagctgggaaagtaatttcagatgat
gtgaagcaattagcacaggaagtttgtgaaagcataagagatgtgttgggtatgcagagt
tttgttcaagtttacagccaaataaggaaaaagctgaaagcaaagagagataaaaggaaa
caggaagaaaagcttatggctgttgtaaatccaatgcgaaatgccaagaggaagataaga
attgcagccaagcataaagctaataagaagaggaaaataatgtcaatgaagatgacgaga
tggatgcaatag
DBGET
integrated database retrieval system
