Ipomoea nil (Japanese morning glory): 109170026 Help Entry 109170026         CDS       T04663                                  Name (RefSeq) 5'-3' exoribonuclease 3   KO K12619   5'-3' exoribonuclease 2 [EC:3.1.13.-] Organism ini  Ipomoea nil (Japanese morning glory) Pathway ini03008   Ribosome biogenesis in eukaryotes ini03018   RNA degradation Brite KEGG Orthology (KO) [BR:ini00001]  09120 Genetic Information Processing   09122 Translation    03008 Ribosome biogenesis in eukaryotes     109170026   09123 Folding, sorting and degradation    03018 RNA degradation     109170026  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:ini03021]     109170026    03019 Messenger RNA biogenesis [BR:ini03019]     109170026    03009 Ribosome biogenesis [BR:ini03009]     109170026    03016 Transfer RNA biogenesis [BR:ini03016]     109170026 Transcription machinery [BR:ini03021]  Eukaryotic type   RNA polymerase II system    Other transcription-related factors     Transcription termination factor      109170026 Messenger RNA biogenesis [BR:ini03019]  Eukaryotic type   mRNA degradation factors    5'-3' decay     5' exonucleases      109170026 Ribosome biogenesis [BR:ini03009]  Eukaryotic type   Pre-60S particles    RNases     109170026 Transfer RNA biogenesis [BR:ini03016]  Eukaryotic type   tRNA degradation factors    Rapid tRNA decay (RTD) pathway factors     109170026 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  XRN_M XRN_N zf-CCHC Motif Other DBs NCBI-GeneID:  109170026 NCBI-ProteinID:  XP_019174494 LinkDB All DBs Position Un AA seq 1078 aa AA seqDB search MGVPAFYRWLAEKYSMVVVDVIEEEAVVIEGVKIPVDTSKPNPNNIEFDNLYLDMNGIIH PCFHPEDRPSPTTFEEVFRCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR AAKDAAEAAAEEERLREEFEQEGRKLPPKQESQTFDSNVITPGTPFMATLSIALQYYIHL RLNYDPGWRNIKVILSDANVPGEGEHKIMSYIRLQRNLPGHDPNTRHCLYGLDADLIMLA LATHEVHFAILREVVFTPGQQDKCFLCGQMGHLAADCEGKAKRKAGEFDEKGDTEVVAKK PYQFVNIWTLREYLEYEFRIPNPPSEIDFERIVDDFIFMCFFVGNDFLPHMPTLEIREGA INLLMAVYKKEFRLMGGYLTDGSKPNLGCVEHFIQAVGSYEDKIFQKRARLHQRQSERIK REKAQKKREDSVPEVEPESLVPVARFQGSRLASGPSPSPYQQGFRSDQKLRSGNSHDGHT HNHATKVARLASAATVGAAIVEAENSLEIEVRDNKEDLKTKLKELLREKNDVFNSENPEE DKIKLGEPGWKERYYEDKFSAKTPEEMEEIRKDVVLKYTEGLCWVMHYYYEGVCSWQWYY PYHYAPFASDLKELAGLSISFELGTPFKPFNQLLGVFPAASSHALPEHYRKLMTDPNSPI IDFYPTDFEVDMNGKRFSWQGIAKLPFIDEARLLAEVAKVEHTLTDEEARRNSMMLDMLF VSLSHPLSPYIFSLDHRCKQLTEKERVEAKEPIDPGASGGMNGYLSLCGGDPCPPVFRSP VQGMEDIMDNQVICAIYGLPNAHKHITRPPNGVILPKKTVTFGDMKPEPVLWHEDSGRRP RDNGRNNNTGAMTGRQLGEAAHRLVANSLQIADRGDYGDHRYGPPTSYPGAYGPPLQSYQ TNRYNGHEHTRFVPNSSYSARDAGGYQRSSHSTVSQHHLYDDNHSQTNAYSGSHHAYRRP NPHHERIDQSVAQSRDYHRHGYYAPGLQHNGGHSYHSGATHHQHVHLTPHPPPTHIPNHR GYNHQPYESGSYNHLGSGQGPHSNPGGGRGYNYPHQSSNQYAALNRGSNRRPPSDYRR NT seq 3237 nt NT seq  +upstreamnt  +downstreamnt atgggagttccggcattttaccggtggctggcggagaagtattcgatggtggtggtggat gtgatcgaggaagaggcggtggttatcgaaggagtaaaaattccggtggataccagtaaa cctaatccaaataatatcgaattcgataacctctatctagatatgaatggtattattcac ccgtgttttcaccccgaagatcgaccttctcctaccacattcgaggaggtatttcgatgc atgtttgactatatagacaggctctttgtaatggtgcgccctcgaaagctactgtacatg gctattgatggtgttgctccaagagctaaaatgaatcagcaaaggtctaggcgttttaga gccgcaaaagatgcagctgaagcggcagctgaagaggaaaggttgcgtgaggagtttgag caggagggtaggaagcttcctcccaagcaggaatcacaaacttttgattcaaatgttatc actcctggaactcccttcatggccactttgtcaattgcactccagtactacattcatctc aggctaaactatgatcctggatggagaaacattaaggttatactctctgatgcgaatgtt cctggtgaaggggaacacaaaattatgtcatacattcgtttgcaaaggaaccttcctggt catgaccctaatacaagacattgtttgtatggtctggatgcagacctaatcatgttggct ttggctactcatgaagtccactttgctatacttagagaggttgtatttacccctggtcag caggacaaatgttttctatgtggtcaaatgggccacttagcagcagattgcgaagggaag gcgaagagaaaggctggggagtttgatgaaaaaggtgatactgaagtggtggcaaaaaag ccttatcagttcgtcaatatttggaccctgagggagtacttggagtatgaattcagaatt ccaaatcctccttctgagattgatttcgagcgcattgttgatgattttatattcatgtgt ttctttgttgggaatgattttctgccacatatgcccacgcttgagatccgtgagggtgca ataaacttgctcatggctgtttacaagaaggagtttaggttgatgggagggtatttgact gatggcagcaagccaaatcttggctgtgtggagcattttatacaggcagtggggtcatat gaagataaaatattccagaaaagagcacgcttgcatcagaggcaatccgaaagaatcaag cgtgaaaaagcacaaaaaaaacgagaagattctgtgcctgaagttgaacctgaatcgttg gttccagttgctcggtttcagggttctcgtcttgcatctggcccctcaccttctccatat caacaagggtttagatctgaccaaaagttgcggtctggaaattctcatgatggccatact cataaccatgctacaaaagttgcacgcttggcatctgcagccacagtaggagctgcaatt gttgaggctgagaatagccttgaaattgaagtgcgtgataacaaagaagatttgaaaacc aagctgaaagagctacttcgtgaaaagaatgatgttttcaactcagaaaatcctgaagaa gacaagatcaagctgggagagccaggttggaaagagaggtattatgaggataagttctct gcaaaaacacctgaggaaatggaagagatacggaaagatgttgttttgaaatacactgaa ggcctatgctgggttatgcactattattatgaaggcgtttgttcctggcagtggtattac ccgtatcactatgcaccatttgcttcagacttgaaggaacttgcaggattgagcataagc tttgaattgggtactccatttaaaccattcaaccaactgttgggtgtgttccctgcagca agttcacatgcacttcctgagcattataggaaattgatgacagacccaaactcgcctatt attgatttttatcccactgattttgaagtggacatgaatggcaagaggttttcttggcag ggcattgccaaattgcctttcattgatgaagctcggctccttgcagaggttgcaaaagtt gaacatacattgacggatgaagaagcacggagaaacagtatgatgcttgatatgctcttt gtgtcattgtctcatccactatctccatacatcttctctcttgatcatcgctgtaaacag ctgactgaaaaagaaagggttgaagcaaaggagcctattgacccaggggcaagtggtggg atgaatggctatttatccctctgtgggggagatccgtgtcctccagtttttagatcacct gttcaaggaatggaagatattatggataaccaagtcatatgtgcaatatacggacttcca aatgcccataaacacattactcgacctccaaatggggttattttgccgaagaagactgtg acatttggtgacatgaagccggagcctgtactttggcatgaggattctggaaggagacct agggataatggaagaaacaataacacaggagctatgactggtcgacaacttggtgaggct gcacatcgacttgtagctaatagtttacagatagcagataggggtgactatggtgatcat aggtacggaccgcctacatcctaccccggtgcttatggtccaccattgcaatcctatcaa acgaacagatataatggccacgagcacacaaggtttgtgcctaattcaagctattctgct cgagatgctggaggttaccagaggtcatcacattcaacagtctcgcaacaccacctttat gatgataatcatagccagactaatgcttattcgggctctcatcatgcctacaggaggcct aatcctcatcatgaaaggattgaccaatctgttgcccagagtagggattatcatagacat ggatattatgcaccagggttgcagcacaatgggggacactcctaccactcaggtgccaca caccatcaacatgtgcacttaactccccatccaccaccaactcatatacccaatcacaga ggatataatcatcaaccttacgagtctggtagttataatcatttgggcagtggtcaaggt cctcatagcaacccaggtggtggcagaggatataattatccacaccaatcaagcaatcaa tatgcagctttaaataggggatcaaatagacgaccaccttctgactatcggcgctag

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