KEGG   Ipomoea nil (Japanese morning glory): 109170122
Entry
109170122         CDS       T04663                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
ini  Ipomoea nil (Japanese morning glory)
Pathway
ini03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ini00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109170122
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ini03041]
    109170122
Spliceosome [BR:ini03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    109170122
 Complex C
   U5 SnRNP specific factors
    109170122
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WDR55 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st Beta-prop_EIPR1 NBCH_WD40 ANAPC4_WD40 Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_SPT8 Beta-prop_RIG_2nd WD40_RFWD3 Beta-prop_DCAF4 WDR90_beta-prop_4th Beta-prop_IFT140_1st Beta-prop_WDR35_TULP_N Beta-prop_WDR19_1st Beta-prop_RIG_1st Beta-prop_WDR75_2nd eIF2A Ge1_WD40 Beta-prop_HPS5 Beta-prop_Nup120_160 Beta-prop_DCAF12 WD40_like Nbas_N Beta-prop_IFT140_2nd
Other DBs
NCBI-GeneID: 109170122
NCBI-ProteinID: XP_019174631
LinkDB
Position
Un
AA seq 339 aa
MQTESALSVIGPRPMELSVPFSGPKAPGPNGKQRTSGLESPIMLLTGHQSAIYTMKFNAA
GTVIASGSHDKEIFLWNVYGECKNFMVLKGHKNAVLDVQWMTDGSAIISASPDKTLRAWD
VETGKQIKKMVEHSSFVNSCCPARRGPPLIVSGSDDGSSKLWDMRQRGAVQTFPDKYQIT
AVSFSDASDKIYTGGIDNDVKVWDLRRSEVTMTLQGHQDTITGMSLSPDGSYLLTNSMDC
SLRIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVWDTTSR
RILYKLPGHTGSVNECVFHPTEPIIGSCSSDKQIYLGEI
NT seq 1020 nt   +upstreamnt  +downstreamnt
atgcaaacagaaagtgctttgtctgtcattggtccaagaccaatggaactgtctgttcct
ttcagtggtcctaaagcacctggaccaaatgggaaacagcgaacatccggcttggaatct
ccaatcatgttactaacaggacatcaaagtgccatatacacaatgaagttcaatgctgca
ggaactgtaattgcatctggttcacatgataaagaaatttttctttggaatgtatacggt
gaatgcaaaaactttatggtgttaaaagggcacaagaatgctgttctggatgttcagtgg
atgactgatgggtcagccataatatcggcaagccctgacaagactctgagagcttgggat
gttgaaactggaaaacagataaagaagatggttgaacattcctcttttgttaattcatgt
tgtcctgctcgaaggggacctcctcttattgttagtggctccgacgatggcagttctaaa
ctttgggatatgcgtcaaagaggagcagtacagacatttcctgacaaatatcaaataact
gcagtcagtttctctgatgcatctgataagatatatactggtggcatcgacaatgatgtg
aaggtgtgggatcttcgtaggtctgaggttacaatgacacttcaaggccatcaagacacg
attacgggtatgtcattgagtccagatggctcttatcttctaaccaactccatggactgc
agtcttcgcatatgggacatgcgcccatatgctccacaaaatcggtgtgtcaagattttg
gaagggcaccagcacaattttgaaaagaacttacttaaatgtagttggtcaccagatgga
agcaaagtaactgctggcagctctgaccgtatggtttacgtttgggacacaacttccagg
cgcattttgtataaacttcctggccacactggatctgtgaatgagtgtgtctttcatccc
accgaacctatcattggttcgtgtagtagtgataaacagatctatcttggtgaaatttaa

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